Oncorhynchus tshawytscha (Chinook salmon): 112229416
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Entry
112229416 CDS
T05605
Name
(RefSeq) putative uncharacterized protein DDB_G0271982
KO
K16337
syndecan 3
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04514
Cell adhesion molecule (CAM) interaction
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
112229416
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
112229416
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
otw00535
]
112229416
Proteoglycans [BR:
otw00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
112229416
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syndecan
BUD22
Motif
Other DBs
NCBI-GeneID:
112229416
NCBI-ProteinID:
XP_042166014
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All DBs
Position
LG31:30997121..31044755
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AA seq
492 aa
AA seq
DB search
MKLPPCFVALIAALLVHSALGQTWVPSDEESSSRDEFYDDEDLVSGSGSGFPEMKVNPIA
VGVSFTTEAPLPFSTTQATGPAPSAPPVAEPSPKVDVLPTPLPTEGEGERVLPTPLPTEG
EGERVLPTPLPTDGEGERVLPTPLPTEGEGERVLPTPPPTEGEGESGVEWEREQEKEREQ
EKEREQEKEREQEKERERERERERERERERERERERERERVRERERERIREREGEREKAR
AAQTTISPRGPAALPMATTSLAATPAESAAPSSGVEDLGTTEEEDEDVYLSPDPTTSLLM
ETTTEEEEEEVTTTETETTPIPETTAPPTTTGPAPAERSSSAPFRPRVPVTLPTKAAPTE
KSTRPQPPSTTNNELGVNGPSGDFEIREEDRRQGNEVVGRGVETGAEPDLIGNTINTGSS
AAQLPQKNILERKEVLIAVIVGGVVGALFAAFLVMLLVYRMKKKDEGSYTLEEPKQTTVT
YQNPDKQEEFYA
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgccgccttgtttcgtggcgctcatcgcggcgctgctcgttcactccgcgctg
ggtcagacctgggttccatcagatgaagaaagttcttccagagatgagttctatgacgat
gaagacctcgtctcaggctctggatctggctttccagagatgaaggtcaaccctatagcg
gtgggcgtatctttcaccacggaagcgcccctccccttctctaccacccaggccactggc
cccgccccctcggccccacctgtagccgagcccagccctaaagttgacgtccttcctacc
ccactacccactgagggagagggggagagagtccttcctaccccactacccactgaggga
gagggggagagagtccttcctaccccactacccactgacggagagggggagagagtcctt
cctaccccactacccactgagggagagggggagagagtccttcctaccccacctccaact
gagggagaaggggagagcggggtagagtgggagagagaacaagagaaggagagggaacaa
gagaaggagagggaacaagagaaggagagggaacaagagaaggagagggaacgagagcga
gagagggagagggaacgagagagggagagagaacgagagagggagagagaacgagagagg
gtgagagaacgagaaagagagaggatacgggaaagagaaggtgaaagagagaaggcgaga
gccgcccagactaccatttccccccgcggccctgcagctcttcccatggcaaccaccagt
ttggcggcgactccggcggagagtgcagcgccctctagcggcgtggaggacctgggcacc
acagaagaagaggacgaggatgtttacctgtccccagaccccaccaccagtttacttatg
gagaccaccacagaagaagaagaagaagaagtgaccactactgagacagagaccacaccc
atcccagagacaacagctccacccactacgactggcccagccccagctgagaggtctagc
tccgcccccttcaggcccagggttcctgtgaccttgcctactaaagctgcacccacagag
aagagcacacgtccccagccaccctctacgacgaataatgagttgggggttaacggaccc
agtggagactttgagatccgtgaggaggaccgtcgtcagggaaacgaggttgttgggcgt
ggtgtggagacgggagcagagcctgatctgattggcaacacgatcaacacgggaagttct
gccgctcaacttcctcagaagaacatcctggagaggaaggaggtcctgatagcggtgata
gtggggggcgtagtgggggctctgtttgcagcgttcctggtcatgctgctggtgtacaga
atgaagaagaaagatgaaggcagctacacgctggaggaacccaaacagaccactgtcacc
taccagaaccctgacaaacaggaggagttctacgcatga
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