Oncorhynchus tshawytscha (Chinook salmon): 112229488
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Entry
112229488 CDS
T05605
Symbol
vps50
Name
(RefSeq) syndetin isoform X1
KO
K23288
syndetin
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112229488 (vps50)
Membrane trafficking [BR:
otw04131
]
Protein recycling
Others
EARP complex
112229488 (vps50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Ntox15
Motif
Other DBs
NCBI-GeneID:
112229488
NCBI-ProteinID:
XP_042166120
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All DBs
Position
LG31:23169591..23398992
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AA seq
998 aa
AA seq
DB search
MQKIKSLMARQGLKSPQESIADLSPVEDFRIPSKEEMREMREQPIDPQAEQEIINSIQEV
YYSNDSFDMVQHELEKLPPELNLQELEEYRDQLKRQQAAVSKKVADLILEKQPSYVKELE
RVTSLQTNLQLAAVICTNARRQLSISKEDFTEASLGLLANQRRRHLLTGLLKSLRTIKTL
QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
LSKTCKHFDVSHYTRVQLAYTLLEKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNA
DTKFQKMQYKDLCTHITQDSYVPCLSDLCKALWEVMLSYHRTMQWHEEQDKEEPPPTTDE
AGAADTEEAVVDHSYVKKKLEHGLTRIWQEVQLKVKAYLLGTDMSNFKYDDFIVVLDVIS
RLMQVGEEFCGSKSELLQESIKRQSVNYFKNYHRTRLEELRMFLENETWELCPVKSNFNI
AQLHEFKFMGQSRSPSVSPSRQVLSSQDQVLSSKDQEVLSLFQHFSQEGNPFERHIDNKD
EETEDVLASNGYESDELEKCVYQDYDSDSDVPDELKQDYVDEQTGDVPLKSASRETLRSR
KKSDYSLNKGSNAPILTNTTLNVIRLVGKYIQMMNILKPIAFDVIHCVSQLFDYYLYAVY
TFFGRNDMPAPGLGVPGREAGPARPVAPFCWYESSGPGLISSRLRTTLNRIQESLIQMDS
LGEGSSSVHGGPGEDRKEKVPSPHLSQLVVLTASETLYGLAQRVVATESLVFLAEQFEFL
QSHLDTMMPAAKKPFLQQFYSQTVSTASELRKPIYWVVAAKALDYEQMLLLMAGVKWDIR
EIMSQHNVYVDVLLKEFEEFNKRLGDVSRHVRVPLPVSNVLWEHCIRLANRTLVEGYGNV
KKCSNEGRALMQLDFQQFLMKLEKLTDMRPIPDKDFVETYIKAYYLTENDMEQFIKNHRE
YSMKQLANLVNVCLGSHINKKARQKLLAAIDDIDRPKR
NT seq
2997 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaagataaagtcacttatggcccggcagggcttgaaaagcccacaggagagcatt
gcagacctcagcccagtggaggacttcaggatcccaagcaaggaggagatgagggagatg
agggagcagcccatcgacccccaggcggagcaggagatcattaacagcatccaggaggtc
tactactccaacgactcctttgacatggtgcagcacgagctggagaaactcccacctgag
ctgaacttgcaggagctggaggagtacagagaccagctgaagagacaacaagcagcggtt
tccaaaaaagttgccgatcttatcctggaaaaacagccgtcctacgttaaggagttggag
agggtgacgtcattacaaaccaatctacagctggctgcagtgatttgcaccaatgctagg
aggcagctgagtatttcaaaggaggacttcaccgaggccagcctggggctcctagccaat
cagaggaggagacacctgctcacagggctgctgaagtcactgaggaccatcaagaccctg
caaaggactgatgttcgactcagtgagatgctggaggaagaggactatcctggtgccatc
cagttgtgtctggaatgtcagaaggctgccagcacattcaaacactacagctgcataagt
gagttgaattccaagctacaagacactctggagcaaatagaggagcagctggatgtggcc
ttgtctaaaacctgcaagcactttgatgtctcccactacaccagagttcagctggcgtac
accctcctggaaaagacccagacggccatggaccagctccacatgcacttcacccaggcc
atccacaacactgtgttccaggtggttctgggatacgtggagctctgtgccggcaatgcc
gacaccaagtttcagaagatgcagtacaaggacctctgcacgcacatcactcaagacagc
tacgtcccctgcctgagcgacctgtgcaaggcattgtgggaggtgatgctcagctaccac
cggaccatgcagtggcatgaggagcaagacaaggaggagcccccacccaccacagatgaa
gcgggtgctgcagacaccgaggaggcggttgttgaccacagctatgtaaagaagaaactg
gagcatggactcactcgaatctggcaggaagtccagctaaaagtgaaagcctatctgctt
ggtacagacatgtctaacttcaaatatgacgacttcatcgtggtcttggatgttatcagc
aggctgatgcaagtgggggaggagttctgcggcagtaagtcagagttgctgcaggaatcc
atcaaacgtcagagcgtaaactacttcaagaactaccacaggacacgcctggaggagttg
cggatgtttctggaaaatgagacgtgggaactgtgtcctgtcaagtccaacttcaacatc
gctcagctccatgagtttaagttcatgggtcagagccggtccccttcagtgtctcccagt
agacaggtgttgtccagtcaggaccaggtgttgtccagcaaggaccaggaagtcctgtct
ctgtttcagcacttcagtcaggaggggaacccctttgagaggcacatcgacaacaaagat
gaggagactgaggacgtactggcctccaacgggtatgagtccgatgagctggagaagtgt
gtgtaccaggactatgacagcgacagtgacgtccctgatgaactcaagcaggactacgtg
gacgagcagaccggagacgtccctctcaagagtgcgtcaagggagaccctgcgcagcagg
aagaagtccgactacagcctaaacaaaggctccaacgctcccatcctgaccaacacaacc
ctcaacgtgatccgactggtcgggaagtacatacagatgatgaacattctgaaaccaata
gcctttgacgtcatccactgtgtttcccagctgtttgattactacctgtatgctgtctac
accttcttcggccgcaatgatatgcctgcccctggcctgggtgtgcccggcagggaggct
ggtccggccaggcctgttgcccctttctgctggtatgaatcatcaggtccgggtctgatc
agcagccgactgagaacaacactgaacagaatccaggagagcctcatccaaatggattct
ctgggggaaggcagctccagcgtgcacggtggtccgggggaggacagaaaggagaaggtg
cccagcccccacctcagccagcttgtggtcctgacagccagcgagaccctctatggcctg
gcccagagggtggtcgccacagagtcactggtgtttctggccgagcagtttgagttcctt
cagtctcacctagacaccatgatgcctgcagccaagaagccgttcctccagcagttctac
tcacagactgtctccacggccagtgagctacgtaaacccatatactgggtggtggcggcc
aaggctttagactacgaacagatgctgctgctgatggctggagttaagtgggacattagg
gagataatgtcgcagcacaacgtgtacgttgacgtcctgttaaaggagtttgaagagttt
aacaagaggctgggtgatgtgtccagacacgtccgggtccctctgcctgtgtctaatgtc
ctgtgggaacactgcatccgtctggccaacaggacgctggtggaaggctatggtaacgtg
aagaagtgcagtaacgaagggcgggccctgatgcagctggacttccagcagttcctgatg
aagcttgagaagctgacggacatgaggcccatccctgacaaggactttgtggagacctac
atcaaagcctactacctgactgagaatgacatggagcagttcatcaagaaccacagggag
tactccatgaagcagctggccaacctggtgaacgtgtgtctgggctctcacatcaacaag
aaggcccggcagaaactcctggcggctatcgacgacatcgacagaccaaagagatag
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