Oncorhynchus tshawytscha (Chinook salmon): 112229502
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Entry
112229502 CDS
T05605
Name
(RefSeq) peroxisome biogenesis factor 1-like
KO
K13338
peroxin-1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04146
Peroxisome
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
112229502
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112229502
Membrane trafficking [BR:
otw04131
]
Autophagy
Pexophagy
Other pexophagy associated proteins
112229502
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
PEX-2N
PEX-1N
AAA_lid_3
AAA_16
AAA_22
AAA_14
nSTAND3
TIP49
NPHP3_N
RNA_helicase
AAA_5
AAA_33
AAA_28
ATP-synt_ab
AAA_18
ABC_tran
RuvB_N
Sigma54_activ_2
AAA_24
DUF815
NACHT
Bac_DnaA
IstB_IS21
APS_kinase
Parvo_NS1
AAA_29
cobW
Motif
Other DBs
NCBI-GeneID:
112229502
NCBI-ProteinID:
XP_042166505
LinkDB
All DBs
Position
LG31:complement(22971126..22997425)
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AA seq
1273 aa
AA seq
DB search
MLGNHGIQPVTLIFHNTKNCFLHLPPNLLKQLSLQDNQALELSWGHDARVFLSWTRSRSP
VNQEDHKVALSRQLGEKLGLRDGEQGFLRSCQQVLSVQQVFVEPLSSDDWEILELHSAEL
EQQLLDQIRVVFPDAVFPVWVDQRTVIYIRIASLTPTVPYGRLEQFTELHVSPKIRAGSE
DLSCAPSGSSLSNQNMPLHRQPNFDLSPSSRSSQEFSVQGTGLPVEQHPNAAALQSPRQW
GGIADVKSLVRYMLTGNCDPVRETPPIPTIPALLSDSVFRVCRAPPVSPGPLSATHGVAH
ILPWGQQMGGNIHGGQPAVTYGLLSKVLSPKEVRERAKQAMEKKKGGGAGDAPQPGGAGG
VGDREEKEDATVVKVVCHLTEGLKGKQGSSREGELHSGRVWIPQSLETSLHINPHSSVRI
KPIKSTPKVATSIHLQPLQPLPAAESEVEIQTAFLGWLHTQSHEPLACLTGRSNTIFLPA
TEGKVEFALTVLKSEPEPESKAPDQLFLLAPCVIQKTDIQVVREPVTVPTMKAMGETPNQ
DLPSLSSLGGVEELIRTGFNFLSHSLMGRPLSWELVSTGRGLRGGALLITGAKGSGKTAL
SRALCRKTMEDLDAHVEVVDCKKLKGKRAETVRQILEEVFEQAVWRQPSVVLLDDLDHVT
GAPTSPEHEHGPEALLRLHIAQSLRDMVHDVVVRSSLVSLVVSSHSEHSLHPSLREVQGS
HFLQGFIHIQPPDQAQRGEILRCLILSKTAVSKETLHTLDLGIIAKETEGYLPRDLALLL
ERAIHANALHRARSTQGVCLSWRDFVQALKGFTPPTLWGAQLQSPSGAGLERVGGLHQVR
QLLMDTILLPAKYPVLFSSLPIRQRSGLLLYGAPGTGKTLLAGAVAKESGMNFISIKGPE
LLSKYIGASEQAIRDVFQRAQAATPCILFFDEFDSLAPRRGHDNTGVTDRVVNQLLTQLD
GVEGLQGVYVLAATSRPDLIDPALLRPGRLDKSLYCPPPDQEARVEILRALSHSVPLADD
VDLEQMAGATDTFTGADLKALLYNAQLEAIHSSLGPSLLHDLGSGSDSDISLSSMIFLNH
SSGSDDSTGEGERGCGLDHSMVLLDLSDVPPEDPRGNIWRLYFGSSFESELGNPSPSGLN
SQGVSGPNSNDLTGASVRDPGFSHPPAYMSSLQDGYEELSHEQLDRLRLEISNIKSNYRR
ATEDSVPVQGGPIRTGLLLCQAHLTSALNATRASLSKQDWRRYTDLYESFGASGEGKSQS
TVTFKPGQRVTLA
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
atgttgggcaatcatggcatccaacctgtcactctgattttccacaacacgaaaaactgt
tttcttcaccttcctccaaacttgttaaaacagctctctctccaagacaaccaggccctg
gagctgtcctggggtcatgatgcccgtgtgttcctcagctggaccagaagcagaagccct
gtcaaccaggaggaccacaaagtagcgctgagcaggcaactgggagagaagcttggactc
agagatggagagcagggcttcttgcggtcatgccagcaggtcctgtctgtacagcaggtg
tttgtggagccactctcctctgacgactgggaaatcctggagctccacagtgcagagctg
gagcagcagctcctggatcagattagagtggtgtttcctgatgcagtgtttcctgtgtgg
gtggaccagagaacagtcatctacatcagaatcgcttcactcaccccaactgtgccgtac
ggtcgattagagcagttcacagagctacacgtctctcctaaaatccgtgctggaagtgag
gacctctcctgcgctccttctggatcatccttatccaatcagaacatgcccctccacagg
cagccgaactttgacctctcaccctcctccaggtcctctcaggagttcagcgttcagggg
actggactccctgtagaacaacatcctaacgctgctgccctccagagcccccggcagtgg
ggcgggatagcagacgtaaagagcctggtcaggtacatgctaacagggaactgtgaccct
gtgagagagactccacccatccccaccatccctgccctcctcagtgactcagtcttcaga
gtgtgcagagcaccgcccgtgtctcctggccctctgagtgccacccatggggttgcccac
atcctgccctggggccagcagatgggaggtaatatccatggaggccagccagctgtgacc
tatggcctactgtccaaggtgctctctcccaaggaggtgagagagagggctaagcaggcc
atggaaaagaagaagggtggcggggctggtgatgctccccagccaggtggtgctggtggg
gtaggagacagggaggaaaaagaggatgccactgtagtcaaggtggtgtgtcaccttaca
gaggggttgaaagggaagcagggatcatctagagagggagagctccacagtggaagggtc
tggatcccacaatccctggaaactagtcttcatatcaacccacactcatcagtgagaatc
aagccaatcaagtcaactcctaaagtagccaccagtatccacctgcagcctttacaacca
ctgcctgcagcagagagtgaggtggagattcagactgccttcctgggttggctgcacacc
cagagccacgaaccactagcctgtctgactggccgctccaacaccatcttcctacctgcc
actgaaggcaaggtggagtttgctctgactgtgttgaagtcagaacctgagccggagagt
aaagcgcctgaccagttgtttctgttggctccatgtgtgatacagaaaacagacatacag
gttgtcagggaacctgtaactgtgcctacaatgaaagccatgggtgagacacctaatcaa
gatctaccctctctcagcagtcttggtggtgtggaggagctgatcaggacagggtttaac
ttcctctcccacagcctgatgggacggcctctctcctgggagctggtgtccaccggccgg
ggcctccggggcggagccctactcatcacaggggccaagggaagtgggaagacggcactc
tccagagctctgtgtaggaaaactatggaggacctggatgctcatgtggaggtggttgac
tgcaaaaagctgaaagggaagagagcagagaccgtgaggcagatattggaagaggttttt
gaacaggcggtgtggagacagccctctgtggtcctgctggatgacctggatcatgtgacg
ggggcaccgacctcaccggaacatgaacacggaccagaggctctgctaaggctgcacatt
gcccagagtctaagggacatggtacatgacgtggtggtgcgctccagcctggtgtctctg
gtcgtcagtagtcacagtgaacattctctccacccgtcactcagggaggtgcagggctcc
cacttcctccagggcttcatacacatccagcctcctgatcaggcccagagaggagagatc
ctgcgctgtctgatcctcagtaagactgctgtatccaaggagaccctacatacgctcgac
ctggggattattgccaaggaaacagagggctacctgccccgtgacctggccctgctgcta
gagagggccatccatgccaacgccctacacagggcacgcagcacccagggagtgtgtctg
tcgtggagggattttgtgcaggctctgaagggcttcacccctcccactctgtggggggct
cagctgcagagccccagtggtgcaggccttgagagggtagggggactgcatcaagtacgc
cagttactcatggacaccatcctgctaccggccaagtatccggtgctcttctccagcctt
cccatccggcagcgctcaggacttctgctgtacggcgctccaggcactgggaaaaccctg
ctggctggtgccgtggccaaggagagtgggatgaacttcatcagtatcaagggtcccgaa
ctcctcagcaagtacattggagccagtgagcaggctatcagagacgtcttccagagagcc
caggctgctacgccctgcatcctgttctttgatgagtttgactccttggcacccaggagg
ggtcacgacaacaccggggtcactgaccgggtggtcaaccagctactgacccagctggat
ggggtggagggactacagggtgtgtatgtcctggctgccactagtcgtccagacttgata
gaccctgccctgctgaggcctggccgcctggacaagtctctctactgtccccctcctgac
caggaggcgcgtgtagagatcctgagggctctgagccactcggttcccctggctgacgat
gtggacctggagcagatggccggggccacagacacgttcactggcgctgacctgaaggcc
ctgctgtacaatgcccagctagaggccatccacagcagcctggggcccagcctgctgcac
gacctggggtcgggttcggacagcgacataagcctgtcctccatgatctttctgaaccac
agcagtgggtctgatgactcaactggggaaggggagagagggtgcgggctggaccactcc
atggtgctgctggacctcagcgacgtcccccctgaggacccccgtggtaacatctggagg
ctgtatttcggcagctcctttgagtccgagctgggcaacccttccccctcaggactgaac
tcccagggtgtctcggggcccaactctaatgacctgaccggtgcgtcggtcagagaccct
ggcttctcccaccccccggcctatatgtcctctctacaggatggctacgaggagctcagc
catgagcagctagaccgcctccgtctggaaatcagcaacatcaagagcaactacagacga
gctactgaggacagtgtcccggtccagggtggccccatcaggacaggtctgctcctgtgt
caggcccacctcacctcagccctgaatgccaccagagcctccctcagcaagcaggactgg
aggaggtacactgacctgtatgagtcctttggcgcttcgggagaaggaaagtctcagagc
acagtgacgttcaaacccggccaaagagtaacgctcgcttaa
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