Oncorhynchus tshawytscha (Chinook salmon): 112229625
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Entry
112229625 CDS
T05605
Name
(RefSeq) thyroid hormone receptor beta isoform X1
KO
K08362
thyroid hormone receptor beta
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04080
Neuroactive ligand-receptor interaction
otw04081
Hormone signaling
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
112229625
04081 Hormone signaling
112229625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112229625
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
otw03310
]
112229625
Transcription factors [BR:
otw03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
112229625
Nuclear receptors [BR:
otw03310
]
1. Thyroid hormone like
1A. Thyroid hormone receptor (THR)
112229625
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
PAP_central
CpXC
Motif
Other DBs
NCBI-GeneID:
112229625
NCBI-ProteinID:
XP_042165850
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Position
LG31:complement(16603208..16719563)
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AA seq
416 aa
AA seq
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MSEQGDKCTTPRWKHEAMQNGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRT
IQKNLNPTYACKYEAKCIIDKVTRNQCQECRFKKCITVGMATDLVLDDSKRLAKRKLIEE
NRERRRKEELQKTVWDRPEPSQEEWDLIRMVTEAHMSTNAQGNHWKQKRKFLVEEAMLLN
EITCNLFYTSDQSAVGVKETKPEDIGQAPVINAPEGSKVDIEAFSQFTKIITPAITRVVD
FAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGG
LGVVSDAIFDLGLSLSSFHLDDSEVALLQAVILLSSDRPGLTSVERIERCQEEFLLAFEH
YINYRKHKVAQFWPKLLMKVTDLRMIGACHASRFLHMKVECPNELFPPLFLEVFED
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcaaggagacaaatgcaccaccccccgctggaaacatgaggccatgcaaaat
gggtacatccctagttacctggacaaggacgagttatgtgtggtatgtggggacaaagct
acaggatatcactatcgctgtatcacctgtgaaggatgcaagggtttcttccggcggacg
atccagaagaacctgaacccaacgtacgcgtgtaagtacgaggcaaagtgcatcatcgat
aaggtgaccaggaaccagtgccaggagtgtcgcttcaagaagtgcatcactgtcggcatg
gcaacagacttggtgctggacgacagcaagcggctcgccaagcggaagttgatcgaggag
aaccgtgagcggcggcggaaggaggagctccagaaaacggtgtgggaccggcctgagccg
tcccaggaggagtgggacctgatccgcatggtcaccgaggcccacatgtcaactaacgcc
cagggaaaccactggaaacagaaacgcaagttcttggtcgaggaagcaatgctacttaat
gaaataacatgtaatttattctatacttctgaccagagtgcagtgggggtgaaggaaacc
aagcccgaggacattggtcaagcgccggtcataaatgcacctgaagggagcaaagtggac
attgaagccttcagtcagtttacaaaaattatcacccccgccattacccgagtggtggac
tttgccaaaaagctgcctatgttctgtgagctgccttgtgaagaccagattatcctattg
aaaggctgctgcatggagatcatgtctttacgggcagccgttcgctacgaccccgagagt
gagacgctgacgcttaacggggagatggccgtgacccgcggccagctgaagaacggaggc
ctgggtgtggtgtcggacgctatctttgatttgggcttatcgctgtcttcgttccatctg
gacgactctgaggtcgctctgctacaggccgtcatcctcctgtcctccgaccgtccgggg
ctgaccagcgtggagcgtattgagcgctgtcaggaggagttccttctggcctttgaacat
tacatcaactaccgcaaacacaaggtggcgcaattctggcccaagctgctgatgaaggtg
acggacctgcggatgatcggggcgtgccacgcctcccgcttcctgcatatgaaggtggag
tgccccaacgaacttttccccccactcttcctggaggtctttgaggactga
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