Oncorhynchus tshawytscha (Chinook salmon): 112229692
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Entry
112229692 CDS
T05605
Name
(RefSeq) thrombospondin-3b
KO
K04659
thrombospondin 2/3/4/5
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04145
Phagosome
otw04510
Focal adhesion
otw04512
ECM-receptor interaction
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112229692
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
112229692
09144 Cellular community - eukaryotes
04510 Focal adhesion
112229692
09142 Cell motility
04820 Cytoskeleton in muscle cells
112229692
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112229692
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
otw04147
]
112229692
00536 Glycosaminoglycan binding proteins [BR:
otw00536
]
112229692
Membrane trafficking [BR:
otw04131
]
Endocytosis
Phagocytosis
Opsonins
112229692
Exosome [BR:
otw04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
112229692
Exosomal proteins of colorectal cancer cells
112229692
Exosomal proteins of bladder cancer cells
112229692
Glycosaminoglycan binding proteins [BR:
otw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112229692
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
COMP
EGF_CA
cEGF
EGF_3
EGF_MSP1_1
Motif
Other DBs
NCBI-GeneID:
112229692
NCBI-ProteinID:
XP_024251431
LinkDB
All DBs
Position
LG31:12264545..12297845
Genome browser
AA seq
955 aa
AA seq
DB search
MDMVRFVLNLLLASAAVLLGLTRASEMQVIDMLELHDARQSASAVGKMSGALGFVSDLYL
VSTLRLPPKLGGVLLGVYNKGDNRKYLEVALMGKVNKVLVRYVRKDGKLHTVNLQNPGLS
DGRTQSLILRVGGLQRNHLHMELYVNCRLADSAQVLPSMVQLPAEAESVEIRNGQKAYAR
LQGSVDSLKLALGGSIAKAGILTDCPFQGDTHFPNSVSADVNAILGDHTKALIGQLIIFN
QILGELREDIREQVKEMSLIRNTILECQVCGFHETHSRCEPNPCYKGLACTETREYPGYR
CGACPDGMTGNGTHCQDIDECALARPCFSPEGCVNTAKGFTCEPCPVGFSGPLLSGLGVE
FAKSHKQKCRDVDECAVLYKACVPNSVCINTEGSFRCGPCKESFVGNQTVGCFLRRSCAT
LGFNPCDVNAHCVIKGAARVSCECNVGWAGNGHTCGPDTDIDGYPDQPLPCIDNDYHCRA
DNCVNTPNSGQEDADGDGIGDQCDEDADGDGIKNVEDNCRLVPNKDQQNSDTDSYGDTCD
NCPNVPNGSQKDTDGNGAGDTCDNDIDGDGIPNVLDNCPKVPNPMQTDRDGDRVGDACDS
CPEVNDPMQSDTDNDLVGDVCDTNQDMDGDGHQDSRDNCPDVPNSSQLDSDNDGIGNECD
DDDDNDGIPDARPPGPDNCRLIPNPSQTDTNGNGIGDMCENDFDNDSVIDLIDVCPESAE
VTMTDFRNYQTVILDPEGDAQIEPKWIVLNRGMEIVQTMNSDPGLAIGYTAFNGVDFEGT
FHINTATDDDYVGFIFGYQDSSSFYVVMWKQTEQTYWQSLPFRAMAQPGLQLKAVKSRTG
PGEYLRNALWHTGDTPGEVTLLWKDPRNVGWRDKTSYRWHLSHRPQMGYIKVRLYEGMTL
VADSGVLVDTSMRGGRLGVFCFSQEQIIWSNLGYRCNDTVPEDYEFYRKQIHIRV
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atggatatggtgaggtttgtgctaaatttgctgcttgcgagcgcggcggttctgttgggc
ttgaccagggcttcagaaatgcaagtgattgacatgctggagctgcacgatgccaggcag
agtgcgtccgcggtggggaagatgtcgggggctctgggcttcgtgtcggacctttacctg
gtgtcaactcttcgtctgccgcccaaactgggaggagtgctgttgggagtctacaacaaa
ggcgacaacaggaagtacctggaggtggccctcatgggcaaggtcaacaaagttctggtg
cgctacgtacgcaaggatggtaaactccacacagtgaacctccagaaccccggcctctct
gatggacgcacccagtcactcatcctccgtgtgggtgggctccaacgaaaccacctccac
atggaactctatgtcaactgccgattggctgactcagcacaggtcctgccttccatggtc
cagctcccagccgaggcagagtctgtggagatacgcaacgggcagaaggcctatgccagg
ctacagggctcagtggactctttgaaactggctttgggtggctctatagccaaagcagga
atccttaccgactgtccatttcagggagatacacattttccgaattcagttagcgccgat
gtcaatgccattctgggtgaccacaccaaggctttgattggccagctgatcatcttcaac
cagattcttggcgaactccgagaggacatcagggaacaggtaaaggagatgtctctgatt
aggaacactatcctggagtgccaagtgtgtggcttccacgagacccactctcgctgcgag
cccaacccttgctataagggcttggcctgtacagagaccagggagtacccagggtaccgt
tgtggtgcctgcccagacggcatgacggggaatggcacccactgccaggacattgacgag
tgtgctctagcccggccctgtttctcgcccgagggttgcgtaaacacggcaaagggcttc
acctgtgaaccatgtcccgtcggcttctccggacccctccttagcgggcttggggtggag
tttgccaaaagccacaagcagaagtgcagagatgtggatgagtgtgctgtcctctacaag
gcctgtgtgccgaactctgtctgcatcaacacagagggctcgttcaggtgtggtccgtgt
aaggagagcttcgtaggcaaccagacggtgggctgtttcctacggaggtcctgcgccacg
ctgggcttcaacccctgtgacgtcaacgcccactgtgtcataaagggtgctgccagggtc
tcctgcgagtgtaatgtgggctgggcaggtaatgggcatacatgtggcccagacacagac
attgatggctaccccgaccaacctctcccctgcatagacaatgactatcactgccgagcc
gacaactgtgtgaacacgcccaactctggccaggaggacgcagacggagacggtataggt
gaccagtgtgatgaggatgcggacggagacggcatcaagaacgtggaggacaactgccgt
ctggtccccaacaaagatcaacagaactcggacacagactcgtatggggacacgtgtgac
aactgccccaacgttcccaacggaagccagaaggacacagatggaaacggggctggggat
acctgtgacaatgacattgatggggatggtatcccaaacgtgctggacaactgtcccaag
gtgcccaaccctatgcagactgaccgtgatggggatcgagtgggggacgcttgtgacagc
tgcccggaagtcaacgaccccatgcagtctgatacagacaacgacctggtgggagatgtg
tgtgacaccaaccaggacatggatggggacggccaccaggattcaagggacaactgtcca
gacgtccctaacagctcccagctggactcagacaatgacggcatcggcaacgaatgcgac
gatgacgacgacaacgatggcattccagatgcgagacctcccgggccggataactgtcgt
ctcatccctaaccccagccagacagacactaatggaaatggcattggtgacatgtgcgag
aatgactttgacaacgactccgtgatagacttgattgacgtgtgtccagagagcgctgaa
gtcacaatgaccgacttcagaaactatcagacggtcatcctggacccggagggcgatgcc
caaatcgaacccaagtggattgtgctcaatcggggtatggaaattgttcaaaccatgaac
agtgaccctggtttggccataggctacacagcctttaacggggtagactttgaagggaca
ttccacatcaacacggccacagacgatgactatgtgggcttcatcttcggttaccaggac
tcgtccagcttctacgtggtcatgtggaaacagacggagcagacctactggcagtcgctg
ccttttagggccatggcccagccaggcctgcaactaaaggcagtgaagtcacgtacaggt
ccaggcgagtacctccggaacgccctgtggcacacgggcgacaccccgggcgaggtcacc
ctgctgtggaaggacccccggaatgtgggctggagggacaagacatcctaccgctggcac
ctcagccaccgcccgcagatgggctacatcaaagtgaggctgtatgaaggcatgacattg
gtggcagactcgggcgtgctggtggacacctcaatgaggggcgggaggctgggcgtcttc
tgcttctcccaggagcaaatcatctggtccaacctgggctatcgctgcaacgatactgta
ccagaggactatgagttctaccgcaagcagatccacatcagggtgtga
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