Oncorhynchus tshawytscha (Chinook salmon): 112229722
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Entry
112229722 CDS
T05605
Name
(RefSeq) myocyte-specific enhancer factor 2D homolog isoform X1
KO
K09262
MADS-box transcription enhancer factor 2D
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04371
Apelin signaling pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04371 Apelin signaling pathway
112229722
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112229722
04131 Membrane trafficking [BR:
otw04131
]
112229722
Transcription factors [BR:
otw03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
MADS-box regulators of differentiation, MEF-2
112229722
Membrane trafficking [BR:
otw04131
]
Autophagy
Chaperone mediated autophagy (CMA)
Selective cargos
112229722
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SRF-TF
HJURP_C
Motif
Other DBs
NCBI-GeneID:
112229722
NCBI-ProteinID:
XP_024251477
LinkDB
All DBs
Position
LG31:10800551..10835250
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AA seq
576 aa
AA seq
DB search
MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYAST
DMDKVLLKYTEYNEPHESRTNADIIETLRKKGFNGCESPEPDGEDSIDQSPLNDDKYRKT
TEDLDILFKRYGVSSAVPPPTFSMPVTVQASNQNTLQFSNPGNAMVTTSYVTSPSDNHHL
SPQQPALQRNTVSPGLPQRPASAGAMLGGDLNNSNGGCPSPVPNGYISARASPGLLSVSN
GNSLGKVVPAKSPPPPQSPQMVNSRKPDLRVITSQGGKSLMQMTDDELEMVSENAQRLAG
AQVAQALTTPVVSVTTPSLLAQGLPFSAMPTAYNTEYQLTSADITALHALASPGGLLQGN
VSWQQQPSLSQQQQQQQQQQLSLASLSNLVMWGMDKQSGDLSSQISSLAANLSASQSNLL
LGRDEWLGRPVGHIPQGTMLTVNTNSNMSIKSEPISPGRDRHSPCPPPSSSGGGVQTAAP
PPQYPGSLLCLEPPTGRSPADSLSSNGSSYEGNDHDDPVAGGGGGGIGGSAAGNMGNPGR
SLPPEFSPSVELLRAQNEAEQEGANIKRMRLDAWVT
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atggggaggaaaaagattcagatccaaaggatcaccgacgagaggaacagacaggtgacg
ttcaccaagagaaagtttggcctgatgaagaaggcgtacgagctgagtgtgctgtgtgac
tgtgagattgctctcatcatcttcaaccactccaacaaactgttccagtacgccagcacc
gacatggacaaggtgctgctcaagtacaccgagtacaacgaaccccacgagagccggacc
aacgccgacatcattgagacgttgcgaaagaaaggcttcaacggttgcgaaagtcccgag
ccggacggagaggactccatagaccagagccccctgaacgacgacaaataccgcaagacc
accgaagacctagacatcctcttcaagcgctacggtgtcagttctgcggtcccgcccccc
acattttccatgcccgtcaccgtccaggcttctaatcagaacacattgcaattcagtaac
cctggcaacgccatggtgaccacctcctacgtgacgtcgccgtctgacaaccaccacctg
tcgccccagcaaccggcgctccagagaaacacagtgtctcctgggttgccacagcgaccg
gccagtgcaggtgctatgctcgggggcgacctgaacaattcaaatggaggatgcccaagt
ccagtccctaacggatacatcagtgccagggcctccccgggcctcctctctgtctccaat
ggcaacagcctggggaaagtagttccggccaagtccccgcccccgcctcagagcccacag
atggtcaacagccgcaagccagacctccgggtaatcacctctcagggtggaaagagcctg
atgcagatgacagatgatgagctggagatggtgagcgagaatgcccagcgtttggccggc
gcacaagtggcccaggcgctcaccacgccagtggtctccgtgacaacgcccagcctcctg
gcgcaggggttgcccttctccgccatgccgacagcttacaacacagaataccagctgacg
agcgctgacatcaccgctctccacgccctggcgtcaccaggcggcctgctgcaaggcaac
gtgtcgtggcaacagcaaccatctttgtcccagcagcaacagcagcagcaacagcaacaa
cttagtctggcgtcgcttagcaacttggtcatgtggggcatggacaaacagagcggggac
ctgtctagccagatctccagtctggcggccaatctgagcgcctcgcagtccaacctcctc
ttgggtagagatgagtggttgggccggccggtggggcacatacctcagggcaccatgctg
actgtcaacaccaactccaacatgagcatcaagtctgagcccatctcgcctggccgagac
cgccactccccgtgccccccgccgtcctcatccggggggggcgtccagacggccgcgccc
ccgccacaataccctggttccctgctgtgcctggagcccccaaccggccgttcccccgcc
gacagcctcagcagcaacggcagctcctacgagggcaatgaccacgacgaccctgtggca
ggtggcggaggaggaggcatcggcggaagtgcagcgggcaacatgggcaaccctggccgc
tccctgccccccgaattcagcccctcggtggagctcctgcgggcccagaatgaggcggag
caggagggagccaacataaaacgcatgagactcgatgcgtgggtcacatag
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