Oncorhynchus tshawytscha (Chinook salmon): 112229768
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Entry
112229768 CDS
T05605
Name
(RefSeq) semaphorin-6D isoform X1
KO
K06842
semaphorin 6
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
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Gene cluster
GFIT
Motif
Pfam:
Sema
PSI
Motif
Other DBs
NCBI-GeneID:
112229768
NCBI-ProteinID:
XP_024251559
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Position
LG31:complement(9286315..9423704)
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AA seq
1048 aa
AA seq
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MVPPERTRWRLLLAALTLTSCLLSTSATAPPFPKDLEPINVVRWEHSYLYPGFQGLVSDN
DTFRLGLDFQRMLRINHMLYIAARDHVFAVNLTTAGDDFVPQLKLTWRSKDVAKCTVRGR
NSDECYNYVKVLVPRNDETLFACGTNAFNPTCRNYKMTTLEQVGEEVVGQARCPFESGQS
NLGLFAGGDFYSATMTDFLASDAVIYRSLGDDSPVLRTVKYDSKWLREPHFHHAIEYGNY
VYFFLSEIAVEYTTLGKVVFSRVARVCKNDNGGSPRVLERYWTSFLKARLNCSVPGDSFF
YFDVLQSLTNVLQINQRPAVVGVFTTQANSIPGSAVCAFYMDDIEKAFNGKFKEQKTSDS
AWTPVPEEQVPKPRPGSCAGDGLASAYKSSTTFPDDTLTFIKSYPLMDEAVPSVNDRPCF
TRTTSRYKLTQIAVDTSAGPSKDRTVVFLGSEDGRVLKVLSSTHPNASFGSQLLEDIDVY
NPSMCNIQGQEDRRILGMELDKEHHALFVAFTSCVIRVPLSRCTEHGACKKSCLSTRDPY
CIWLRTGSCANMAPGFKAGFEQDIEGDHSLYPENCLADVLATKRNQNPAADSAYGVRRLP
DMEKSSPSVHYTLLIACVLVAFFLGAILSGFLVSCYCSHNARRAHRLGKDPEASLHPALS
LRSLAKLNGLLDGQPKEEKLDVSTPKMYSSFVPNGKEHTPGRHGMSLGDPDLNLSQGENL
SGLPTPDSTPELPIKNMKAFRNQWERNQNCNNAKESKAPPGTGFGLGSSRSSSGVTQQVF
PFSHSLTNGQALGHLPEERKIPNDERAKGASASQSSSCYPQTVVDVAALDELLKHIHEVS
ASGSHSITVLTSPCAPLPGSSSSSHNHSHSQSSFRSQPQIPETESAQYYSSSTLPRDSLT
RRLDVPPDAAAASSAGATPLQQQSIPERTSVTRHHSQRHLMIKMGNGGAVPRQHSFRQGG
VGPPPHQLLTRINSGGGGGGGGGGVGFEAHRPLIPSACLTRQHSYSEPPHLHRAAIVRRT
ASLKPQVPPKPLFLPATSPVNEQGNYNY
NT seq
3147 nt
NT seq
+upstream
nt +downstream
nt
atggtccctccggaacggacgaggtggcgcctcctgctggcagccctcacactcacttcc
tgtctactgtccacctcagccacagccccgcccttcccaaaagacctggagccaatcaac
gttgtccgatgggagcactcctacctgtacccagggttccaggggctggtgtcggacaac
gacacattcagactaggcctggacttccagaggatgctgaggatcaaccatatgctctac
atcgctgccagggaccatgtttttgcagtaaacctgaccacagctggtgacgacttcgtc
ccccagctgaagctgacatggaggtccaaggatgtggccaagtgtaccgtgaggggtcga
aacagcgatgaatgctacaactatgtcaaagtgctggtaccgaggaacgacgagacccta
tttgcttgtggcactaatgccttcaaccccacctgccgtaactacaagatgaccaccctg
gagcaggttggcgaagaggtggtgggtcaggcgcgctgtcccttcgagtcgggtcaatcc
aacctcggcctctttgctggtggtgatttctactctgccaccatgaccgacttcctggcc
agcgacgctgtcatctatcgtagtcttggcgacgacagccccgtcctgcggaccgtcaag
tacgactccaagtggctccgagagccccatttccaccatgcgatcgagtatggaaattat
gtctactttttcctcagtgagattgcagtggagtacaccacactgggcaaggtggtgttc
tctcgtgtggcgcgggtgtgtaagaacgacaacggcggctctcctcgggtgctagagcgc
tactggacctccttcctgaaggcgcggctcaactgctcggtgcccggcgactcgttcttt
tacttcgacgtgctgcagtcgctcaccaacgtgctacagatcaaccagcgccctgcggtg
gtgggagtgtttactacgcaagctaacagtatccctggctcagcagtgtgtgccttctac
atggatgacatagagaaggcctttaatgggaagtttaaggagcagaaaaccagtgactca
gcctggaccccagtaccagaggaacaggtgcccaagcctagacctggttcctgtgccggt
gacggcctggcctctgcctacaagtcgtccaccaccttccccgacgacacgctgaccttc
atcaagtcttaccctctgatggacgaggcggtgccctccgtcaacgaccggccctgcttc
acccgcaccaccagcaggtacaagctgactcagattgcggtggacacctctgccgggccg
tctaaagaccgcactgtggtcttcctgggctcggaggatggcagggtcctgaaggtgttg
tccagcactcatcctaatgcctcctttggctcccagctcctggaggacatagatgtgtat
aacccctcaatgtgtaacattcaggggcaggaggaccggaggattctgggaatggagctg
gataaggagcatcatgccttgttcgtggccttcaccagctgtgtcatcagagtaccactc
agccgctgcactgagcacggcgcctgtaaaaagagttgtctgtccacccgcgacccgtac
tgcatctggctccggaccgggagctgtgccaacatggcgccagggttcaaggctggcttt
gagcaggatatcgagggggaccactcactgtaccctgagaactgccttgcagatgttctg
gcgaccaagcgaaaccagaaccccgcggcagactcagcctacggtgtccgaaggctccct
gacatggagaagtccagccccagcgtccactacaccctcctgatcgcctgcgtcctggtt
gcctttttcctcggtgccatcctctccggcttcctggtgtcatgctactgcagtcacaac
gcccgccgtgcccaccggcttggcaaggaccctgaggcatccctccaccctgccctctcg
ctgcgcagcctggccaagctaaatggcctgctggacggccagccgaaagaggagaagctg
gacgtgtctacgcccaagatgtacagctccttcgttcccaacgggaaggagcacactccg
ggcaggcacgggatgtccctgggagaccctgaccttaacctctcccagggggagaacctc
tcaggcctacccacccctgactccaccccggagctgccgatcaagaacatgaaggccttc
cggaaccagtgggagaggaaccagaactgcaacaacgcaaaggagtctaaggcaccgcct
ggcaccggtttcggcctgggttcgtcgaggtccagctcgggggtcacccagcaggtgttc
cccttctcccacagcctgaccaacggccaagccctcgggcacctgcccgaggagaggaag
atccccaacgacgagcgtgcaaagggggcttcggcctcccagtcctcctcctgctacccg
cagacggtggtggatgtggcggccctggacgagctcctcaagcacatccacgaggtcagc
gcctcaggcagccacagcatcactgtgctgacctcaccgtgtgctcccctgccaggtagc
tccagctccagccataaccacagtcacagccagagcagcttcagatcccagccccagatc
cccgagacggagtcggcccagtactacagctcctccaccctgcccagggacagtctgacc
cgccgcctggacgtgcccccagacgctgctgccgcctcctcagctggagccaccccgctg
cagcagcagtccatccccgagcggacctcagtgactcgccaccactcccagaggcattta
atgatcaagatgggcaacggaggggctgtcccgcgccagcacagcttcagacagggcggg
gttgggccaccaccccaccagctgctcacccggatcaactctggaggtggtggtggtggc
ggcgggggtggggttggctttgaagcccaccggccactcatccctagtgcctgcctgaca
cggcagcacagctacagcgaaccaccccacctccaccgcgccgccattgtacgccgcacg
gcctccctcaagccccaggtaccccccaagcccctcttcctgcccgccacttcgcccgta
aacgagcaaggcaattacaactactga
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