Oncorhynchus tshawytscha (Chinook salmon): 112229790
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Entry
112229790 CDS
T05605
Name
(RefSeq) tenascin-X
KO
K06252
tenascin
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04510
Focal adhesion
otw04512
ECM-receptor interaction
otw04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112229790
04518 Integrin signaling
112229790
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
112229790
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
otw00536
]
112229790
Glycosaminoglycan binding proteins [BR:
otw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112229790
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fibrinogen_C
EGF_TEN
fn3
EGF_Teneurin
EGF_2
EGF_Tenascin
FN3_DSCAM-DSCAML_C
hEGF
EGF
Fn3_Dep-1_3rd
DUF7949
Fn3_PBP1
EGF_PEAR1L
EGF_integrin
Big_5
Ig_J
PRR11_2nd
Motif
Other DBs
NCBI-GeneID:
112229790
NCBI-ProteinID:
XP_024251607
LinkDB
All DBs
Position
LG31:8696152..8721899
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AA seq
1049 aa
AA seq
DB search
MPLVPSFLILLLTCPALLTPSASQDLQPGGQRAPRDTKPEGGGQPIKVVISEACVQGDSS
QTQGKELDLEPGSALVLTHRIRLVPGSCAGGCEAEFAALRDRLERLEKEVSTLREKCGGP
EGGCCTSQQSKGAECSIKPEGDECPNECSDQGRCEDGKCVCFPGFSGPDCSLSDCPGNCN
DKGKCVNGQCVCDPGFTGPDCSSESCPGNCNNKGRCVNGQCVCDPGFTGPDCSTKACPGN
CKNGGKCVNGKCVCDSSFTGPDCSTKSCPGNCSNRGKCVNGQCVCDSGFTGPDCSAKACP
NNCSNKGRCVNGKCVCEVGFSGQDCAAKGCPNNCSNKGRCVKGRCVCRRGFAPPDCSQCE
AGFTGADCGTAMSGVSQLNTKDITESSVTLYWTPPPVQYDTYHVTFTSQKEGDQQITSQV
GGKLTTYTQTGLAAGQEYTVTIKGEINRRMGTESTVEFTTLISGPTNLRVVKTTTTSAVV
QWEQSQGHVDRYRLTVAPNQTDGTAKGRQDLTLPPERDSAQIDGLDPGHLYDITLVAEKG
GIKSKPATVQVTPGPEPPSGLVFSEVTETSFSVSWTKPKGPVSGFKVTYTNTQEGEPLSA
TVDSGDSTLALSKLSPGSSYEVSVISVLGLDESDAIKDLVMTLPDPPRDLRAINVTDTKA
LLLWRPALAPVDHYVIVYGSEKGSDDAKITVSGNAAEQQLKGLQGSTRYTVTVTSQLGNL
DSSAAITVFTTTGGSRGDGEVPRDLKASQVTPRSALLTWKAPSAAVGSYKLTYQTEGQEI
KEVTIDSTVTEFKLTRLHPMSKYTVHLQGERGGSYTATISTEFTTGNLRYPFPSDCSQEL
LNGIHESGEVEIFPRGRQGKPVLVYCDQVTDGGGWTVFQRRMDGKTDFFRGWKNYSKGFG
ELSGEFWLGNENLHNLTSMAPMTLRVDLRAGDESVFAKYSAFTVDTVRRNYALKVSGYSG
TAGDSMSYHNARMFSTRDRDPTPFITRCAMSYRGGWWYKNCHEANLNGLYDTSVNHQGVI
WTAWKGKDLSIPFTEMKLRPTSFTPPTQG
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atgcctcttgtcccatccttcctcatcctgctcctcacctgccctgccctcctgacccca
tcagcttcccaggacctgcagcctgggggtcaaagggcacccagggacacaaagccagaa
ggtggcgggcagccaatcaaagtagtgatctctgaggcgtgtgttcagggggactccagt
cagacccagggcaaggaactggaccttgagcctggttctgctctagtccttacccatcgg
atccgactggttccggggtcgtgcgcaggcgggtgcgaggccgagtttgctgccctgcga
gaccgtctggagaggctggagaaggaggtgtcaacattgagggagaagtgtggaggccca
gaggggggctgctgcacgtcccagcagagtaaaggtgcagagtgctccatcaagccggag
ggagacgagtgtcctaatgagtgcagtgaccagggacgctgtgaagatggcaagtgtgtc
tgcttcccagggttcagtgggcccgactgcagtttgtctgactgccccggcaactgcaat
gacaaggggaagtgtgtgaacggccagtgtgtgtgcgacccaggtttcacagggccagac
tgctcttcagagtcctgtcctggaaactgtaacaacaaggggcgatgtgtgaacgggcag
tgtgtgtgcgacccaggtttcacagggccagactgctccaccaaggcttgtcctggaaac
tgcaaaaacggggggaaatgtgtgaacggtaagtgtgtgtgtgatagcagttttacaggc
ccagactgctccaccaagtcctgccctggcaactgcagcaaccgtggaaagtgtgtgaac
ggccaatgtgtctgcgatagcggctttacggggccggactgttccgccaaagcatgtccc
aataactgcagcaacaagggaaggtgcgtgaacgggaagtgcgtgtgtgaagtgggcttc
agcggacaggactgcgccgctaagggctgtcccaataactgcagcaacaaagggcgctgc
gtgaaggggaggtgtgtgtgtcgccgtggtttcgcccccccggactgcagccagtgtgaa
gctgggttcactggagctgactgtggcaccgccatgtctggtgtgtcccagctcaacacc
aaggacatcactgaatcctctgttaccctctactggacaccacctccagtccagtatgac
acctaccacgtcaccttcaccagccagaaagagggcgatcaacagataacatctcaagtt
ggtgggaagctcacgacctacacccaaacaggactggcggccgggcaggagtacacggtg
acaatcaagggagaaataaataggagaatgggcactgagagcacagtagaattcacaacc
cttatctctggacccacaaaccttcgagttgtgaagacaaccacaacatctgcagttgtc
caatgggaacaatcgcaaggacacgtcgacaggtatcgcttaactgttgcacccaatcag
acggacggaacagccaagggaagacaagacctgacactgccccctgagagggactctgcc
cagattgacggtttggacccgggacatttgtatgacatcacactagtggctgaaaagggc
gggatcaagagcaagccagcaacagtccaagtcactcctggtccagagcctccctcaggt
cttgtcttcagtgaagtgactgagacgtctttctctgtgtcctggaccaagccaaaaggt
cccgtgagtggcttcaaggtcacctacactaacacacaggaaggggagcctctctccgca
acggtggactctggggattccactctggcactgtcaaagctctctccagggtcctcctat
gaggtcagtgtgatatccgtccttggactggacgagagcgatgcaatcaaagacctggtt
atgacactccctgaccctccgagggatctccgggccattaatgtcacagacaccaaggcc
ttgctgctatggcgaccagcactggcaccagtcgaccattacgtcatagtttatggctct
gaaaaagggtcagatgatgccaagatcactgtatcgggcaatgcggcggagcagcagctg
aaaggcctacagggctccactaggtacaccgtcacagtcaccagtcagctgggcaacctg
gacagctctgccgccatcaccgtcttcaccaccaccggtggatccaggggagacggggaa
gttccgcgtgacctgaaggccagtcaggtgactcctcgctcagcgctgttgacgtggaaa
gcaccctctgccgccgtgggaagctacaagctgacctatcaaacggagggacaggagata
aaggaggttaccattgactccacagtaacagagttcaaattgaccaggctgcatcccatg
tccaagtacaccgtgcatctacagggggagaggggagggagctatactgctacaatttcc
actgagttcaccacagggaatctccgataccccttcccaagtgactgttcccaggagctg
ctaaacgggatacacgagtctggagaggtggaaatcttccccaggggaaggcaggggaaa
ccagtgctggtctactgcgaccaggtgactgatggaggtggctggacggttttccagaga
aggatggatgggaaaacggacttcttcagaggctggaaaaactacagcaaaggttttgga
gaactgagtggggaattttggctgggtaatgagaacctacacaatctaaccagcatggca
ccaatgaccctacgtgtggacctccgtgcaggggacgaatcagtgtttgccaagtactct
gcattcacagtggacactgttagaaggaactatgctctcaaagtgtctgggtacagcggt
acagcaggtgactctatgagttaccacaacgcgcgaatgttctctaccagagacagagac
cccacgcctttcatcacccgctgcgccatgtcctatagggggggttggtggtacaagaac
tgccacgaggccaaccttaatggcctctacgacaccagtgtcaatcatcagggtgtgatc
tggactgcctggaaaggcaaggacttgtccatccctttcaccgagatgaagctccgacca
acatctttcacccctccaactcagggataa
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