Oncorhynchus tshawytscha (Chinook salmon): 112229855
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Entry
112229855 CDS
T05605
Name
(RefSeq) glutamate receptor ionotropic, NMDA 2D-like
KO
K05212
glutamate receptor ionotropic, NMDA 2D
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04020
Calcium signaling pathway
otw04080
Neuroactive ligand-receptor interaction
otw04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
112229855
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
112229855
04082 Neuroactive ligand signaling
112229855
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
otw04040
]
112229855
Ion channels [BR:
otw04040
]
Ligand-gated channels
Glutamate (ionotropic)
112229855
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Motif
Pfam:
Lig_chan
Lig_chan-Glu_bd
ANF_receptor
SBP_bac_3
Motif
Other DBs
NCBI-GeneID:
112229855
NCBI-ProteinID:
XP_042166389
UniProt:
A0AAZ3P684
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Position
LG31:7018744..7071370
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AA seq
1962 aa
AA seq
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MYCGWRDEGRRECRAPEKQSLFACEPPPPLRPPNCAPPPPSPMAAKPVLSLLLAVLACTG
PTRSSPPLLLRPRERERDLGVVNIAVVHSGSSLLPETAAAGGTGAVGGPGGPQGRGASSS
LATVSASATLASASAALVGDSVMTQYGPANVIYLTVNESSPASLLLQLCELLATTPLQGL
VFEEERPPPHNQAPLAPMMEFVSAQTGVPVVAVGGGAGLGREPQESGSIYLQFTCSTAMQ
LDVIFEVLEEFDWTSFSVVATRHHGYEDFLAMVEGLTDGSFIGWEKKGVVMLNVTDDPGG
TRTRRLLKENEAQVRLLYCSQEEAALIFKAAWASGQAGHSHMWFAVGPALSGLGLEGLPK
ALFAVRPQGWRDEPRRRIAKGVSVLTHGAMALRKEYGWARGPHYFAGNCQTDGNQTQRVP
DRIRFFSNITLSGRDYSFNSDGYLSNPVLDVISYSEGKGWEEVGTWQNGVLDLIIQPFSR
YGSFLKPLDDTQHLKVVTLEERPFVIVEPADPGTNSCIRDSVPCRLPLNTTNVPVDEKSS
KHCCKGFCIDVLKRLAKIVGFSYDLYLVTNGRHGKRGSDGQWNGMVGEVVYKRADMAIGS
LTVNKERSEAVEFSVPFVETGISVMVSRSNGTVSPSAFLEPYSPAVWVMMFVMCLSVVAV
TVFIFEFFSPVGYNRSLQSAKKTGGSKFTIGKSIWLLWALVFNNSVPVENPRGTTSKIMV
LVWAFFAVIFLASYTANLAAFMIQEEYIDTVSGLSDKKFQQPTEQYPPLRFGTVPNGSTE
ENIRSNYANMHNFMIRNNQKGVEEAIDNLKTGKLDAFIYDAAVLNYMARKDEGCKVMTIG
SGKVFATTGYGIALHKNTRWKRPVDLALLQLVGDDEIDMLERLWLSGICHNDKIEVMSSK
LDIDNMAGVFYMLLVAMGLSLLVFSWEHLVYWKIRQCLGHSGGMDFLLVLSRGMYSCCKF
KDETISGGLKNTLPLYHSVPTMPPPPQSHISAAVTCNTTLAMVQQQQMHQQQQQPQAYSM
LPAASPPTTGHSAMAIGPSNSPLTEGPMPCSTFLPRHDRRLAVVDRWNRPKPSTDKPIGG
SGGIPDMAQFQQGLPPHWAGGAGGGDGGLDEYKRYYGPIDPEGLGANADPQTGGSQTPKM
NQRGTKSSGMPRLPSKGPPPWHFMSKPPLALPSSPHRPLFWRRGSLPKRKGSGGPLYENI
LPLGRRGGGRYGARDGGGRRSRRPPPLLLPVPVSSPAHTTPTTPSHSALYTSSSCSSTSS
SSSSSSSSVSLSRSNSPSSSNTSYTSSQSFKYRAGSRDVEDIYDSDELTEESSLLLVRRK
GKSRRMSSRSLPCSPPPPPVPPRKPRLQYERERAGSQLAQLQEWWASWGERERCRGTGTR
AEGKEEKRHHKESERERKRRKKGRKKKKREEKERERERKRRKVKKKRKREEKVKRRDRGK
RSEHEEGGGEQRGQLKAIMQEAYSSYPAPRRDSMRKKSEGSIRSYGWDIPRDEERRERED
KERDDGDDTRGKERHRSPHSRHRHADRPSSSSKQYQSSSKPSTAVKFWGAGNPSSETPSS
AFLPLIPLSSRRRSKGSDREALGKEGEKRPLLGRNERVEVHTKEGLSFHEWDSEDEDDDS
KEQRRKVEQETRHERRRRAASESERERDKVVGIYSDDDGSSGEFGKFERYWDGHEGRAVG
GIGGGGWFFGTYPAREKAGSINSRDDSLLRHGEGCGEAGIAGEGGWGSGGAWGSRRIGGT
QWPPPPSTPPAPRRYWSVDKLPVKEEKKGKRKDKGRGNVVCNCQSALEHQHAHSKWAKVS
SRSQEELFLHCQRFGSSANSKRHSSKPDRTQIQPISGSQSNLSIQRTQRTDRIRQSSTSQ
SLIPSLPLPTLPALPAPPSASHPIHVPLPTSSSSVSSPSVVSSTPGAPQPSSMASASAKL
LYQRLRSVPQPQRLQSPHLPLKAKSLCSRRGSAHFSSVESEV
NT seq
5889 nt
NT seq
+upstream
nt +downstream
nt
atgtattgtggatggagagacgaggggagaagagagtgtcgggctcctgaaaaacagtcc
ctcttcgcctgtgaaccgccgccacccctccgcccaccaaactgcgccccccctcctccc
tcccccatggcggccaagcctgtcctttccctcctgttggccgtgctggcctgcacgggg
cccactcgctcctcccctcccctcctgctccgcccccgggagagagagagggacttgggc
gtagtcaacatcgctgtggtccactcgggctcctccctgctcccggagacggccgctgct
gggggaacgggcgcagtgggcgggccgggggggcctcagggaaggggggcctcgtcgtca
ttggctacggtgtcggcatctgccacgctggcgtctgcatcggcggctctggtgggcgac
agcgtgatgacgcagtatggcccggccaacgtgatctacctgacggtgaacgagagcagc
ccggcgagccttctgctgcagctgtgtgagctgctggccaccacgccactccagggcctg
gtgttcgaggaggagaggcccccgccacacaaccaggctcccctggcccccatgatggag
tttgtctcggcccagaccggagtgcccgttgtggccgtgggaggaggggccggcctgggc
agggagccacaggagagcggctccatctacctccagttcacctgctccacagccatgcag
ctggacgtgatcttcgaggtgctggaggagttcgactggacctccttttccgtggtggcc
acacgtcaccacggctacgaggacttcctggccatggtggagggcctgacggacggatcc
ttcatcggctgggagaagaagggcgtggtcatgctcaacgtcaccgacgacccgggaggg
acgcgcacacgcaggctgctcaaggagaacgaggcgcaggtgcgtctcctctactgctcc
caggaggaggccgcactgatcttcaaggctgcctgggcctcgggtcaggccggacactcc
cacatgtggttcgccgtggggccagccctgtccggccttggcctggagggcctccccaag
gccctgttcgcagtgcggccgcagggctggagggacgagccccgcaggaggattgccaaa
ggggtgtctgtgctgacccacggagccatggctttgaggaaggagtacggctgggcccga
gggccacactacttcgcgggcaactgccagacagatggcaaccagacacagagggtgcca
gacaggatcaggtttttcagtaacattacgctgagtggccgggactactcgttcaacagt
gatggctacctgtctaatccagtgctggacgtgatttcctactccgaggggaaaggctgg
gaggaggttggcacgtggcagaacggtgttctggatctcattatccagcccttttcacgc
tacggctccttcctcaagcctctggatgacacccagcacctcaaggtggtcaccctggag
gagaggccctttgtcattgtggagccagccgacccaggcaccaactcctgcatccgggac
tcggtaccctgcagactaccactcaacaccaccaatgtgccggtggatgagaaatcatcg
aagcactgctgcaaaggcttctgcattgacgtcctcaagcgattggccaaaatagtgggc
ttctcctatgacctctacctggtgaccaatggcagacacgggaagagggggagtgatggg
cagtggaatggcatggtcggggaggtggtttataaacgggccgacatggccattggctcc
ctgacagtcaacaaggagaggtcagaggctgtggagttctccgtgcccttcgtggagacg
ggcatcagcgtcatggtctcccgtagcaacggcaccgtctcgccgtcggccttccttgag
ccgtacagcccagctgtgtgggtgatgatgttcgtcatgtgcttgtccgtggtcgccgtc
acagtctttattttcgagttcttcagccctgttggctacaaccgcagcctgcaaagtgca
aagaagacagggggctctaaattcaccatagggaagtctatctggctgctgtgggctctg
gtcttcaataactcagtgcctgtggagaaccccagaggaaccactagtaagatcatggtg
ctggtgtgggccttcttcgctgtcatcttcctggcgtcctacacggccaacctggcagcc
ttcatgatccaggaggagtacatcgacactgtgtctggtctcagcgacaagaagttccag
cagcccactgagcagtaccccccgctccgatttggcaccgtccccaatgggagcacggag
gagaacatccgcagcaactacgccaacatgcacaacttcatgatccgcaacaaccagaag
ggcgtggaggaggccatcgacaacctcaagactggcaaactagatgccttcatctatgac
gcggctgtgctaaactacatggcgcggaaggatgagggctgtaaggtgatgaccattggc
tcgggcaaggtgttcgccaccacgggctacggcatcgccctgcataagaacacccgctgg
aaacgcccggtggacttggccctactgcagctggtgggagacgacgagatcgacatgctt
gagcgcctgtggctctctgggatctgtcacaacgacaagattgaggtgatgagctccaag
ttggacatcgacaacatggcgggcgtcttctacatgctgctggtggccatggggctcagt
ctgctggtgttctcctgggagcacctggtgtactggaagatcaggcaatgcctgggccac
tccgggggcatggacttcctactggtcctcagcaggggtatgtacagttgctgcaagttt
aaagatgaaaccatctctggaggcctaaaaaacacacttcccctatatcatagtgttccc
acaatgccgcctccaccccagtcccacatctcagcggctgtaacctgtaacactactctt
gctatggtgcagcagcagcagatgcatcagcagcagcaacaaccgcaagcatacagcatg
cttcccgctgcatctcctccaactactgggcactctgcaatggccattgggccatcaaac
agtccccttacggagggtcctatgccgtgctccacttttctgcctcgtcatgaccgcaga
ttggctgtggtagaccgctggaaccgtcccaagcccagcacggacaagcctattggtggc
agcggtgggatcccagacatggcacagtttcaacagggcttgccccctcactgggctggg
ggagccggcggaggggacgggggcctggatgaatacaagcgatattatggcccgatcgat
ccagagggcttaggggcaaatgctgacccacaaacaggtggctctcaaacccccaaaatg
aaccagaggggaacaaagtcctcaggaatgccacggctaccttctaaaggaccgccccct
tggcacttcatgtccaagccccctctagctctcccctcatccccacatcggcctctattt
tggagaagaggcagcctccctaaaagaaagggctccggggggcctctgtatgagaacatc
ctccccctggggagaagagggggagggcggtacggtgcaagggatggaggtggcaggcga
agccgtcgccctcccccactccttttgcctgtccctgtctcgtcccctgcccacactaca
cctaccactccctctcactccgccctctacacctcgagctcctgctcctccacctcatcc
agttcatcctcgtcctcatcctccgtctccctctcccgctccaactcaccctcatcctcc
aacacctcatacacatcgtcccagagttttaagtacagggctggcagtagagatgtcgag
gacatctacgactctgatgagctgacagaggagtctagcctcctgctagtacggagaaag
ggcaaatcccgacgcatgtcctctcgctcactgccttgcagtccgccccctccgcctgtg
ccaccccgcaagcctcgtctacagtatgagagagagagggcagggagccagctagcccag
ctgcaggagtggtgggcctcctggggcgagagagaaagatgtagaggaacaggaaccagg
gccgaggggaaggaggagaaacggcatcacaaagagagcgaaagggagagaaagaggagg
aagaaagggcggaagaaaaaaaagagagaggagaaggagagagagcgggagcgcaagcgg
cgtaaagtgaaaaagaagaggaagagagaggagaaggtgaagagaagagaccgggggaag
cggtcagagcacgaggagggaggtggtgagcagagagggcagctcaaagcgataatgcaa
gaggcctactcatcctaccctgctccgaggcgtgactccatgcggaagaagagtgaaggt
tctatcagaagttacggatgggatattccaagggatgaagagaggagagagagagaggat
aaggaaagagatgatggagacgacactagaggcaaggaaaggcacagaagtcctcactct
cgccacaggcatgcagataggccttctagttccagcaagcagtaccagagctccagtaaa
ccctcaaccgctgtcaagttctggggagcgggaaacccatcgtcagagactccttcatct
gcatttctaccactgatccctctctcgtccaggcgcaggagtaagggttcagatagagag
gccctagggaaagaaggggagaagcgccccctgttgggaaggaacgaaagagtggaggtt
cacaccaaagaaggtctgtcgtttcatgagtgggattccgaagatgaggatgacgattcc
aaggagcaaaggagaaaagtggagcaagagacgagacacgaaagaagaagaagggccgca
tcagagtccgaaagggaacgcgataaggtggtgggcatctattccgacgacgacggctcc
tcgggagaattcggaaagtttgaaaggtactgggatggtcatgagggtagggcggttggg
ggcataggagggggaggttggtttttcggcacttatcccgccagagaaaaagctggcagc
ataaacagtagggatgactcgttactgaggcatggggagggatgtggggaagcagggata
gcaggggaaggtggctggggatcaggtggagcctggggttcaaggaggataggtggtaca
cagtggcctccacctccatcgacaccaccagctcctcgaagatactggtccgtggacaag
cttcccgtgaaggaggagaagaaagggaaaaggaaggacaaagggcgcggtaatgtggtt
tgcaactgccaatctgccctcgagcatcaacacgctcactctaagtgggccaaggtgagc
tctcgtagccaggaggagctatttctacactgtcaacgtttcgggagcagcgccaattcc
aaacggcattcctccaaacccgaccggacccagattcaacccatatcgggaagccagtcc
aacctcagcatccagcgaacacagaggacggaccgcatacggcagtcctctacatcgcaa
tccctcatcccctccctccctctaccaacactcccagcccttcctgcccctccttctgca
tcccatcccatccacgtccctcttcccacctcgtcctcttcggtctcgtctccctctgtc
gtatcctccaccccaggcgccccccagccgtcttctatggcttctgctagtgccaaactc
ctgtaccagagactgcgctcagtgccccagccccaaaggttacagtcacctcacctgccc
ctcaaggccaagagcctctgctcacggagggggtccgcacacttctccagtgtggagagc
gaggtgtga
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