Oncorhynchus tshawytscha (Chinook salmon): 112229861
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Entry
112229861 CDS
T05605
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112229861
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112229861
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112229861
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
112229861
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
112229861
NCBI-ProteinID:
XP_042165939
UniProt:
A0A8C8IE74
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Position
LG31:6911925..6930421
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AA seq
948 aa
AA seq
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MADKRKLQGEIDRCLKKVTEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKIVERETKTKAYSKEGLGLAQKVDPAQRE
KEEVGNWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKRFIEKHRYHI
RMLETILRMLDNDTLPVDSIRKIKDDVEYYMDSSQDPDFEENEFLYDDLDLEELPTSPSV
SPHPSLVSLAGSLVATSPPGQSLLDDDLFHQISSGTPTSTTSSSPIPPSSATYTTENSED
DKKRGRSTDSEVGQLCCTRSGFEVMPFIKFQSPIKNGNPSSSLSSSSSSSSSSSSASSGA
SSSSLATIAGVGLPVTGGNSLLGNMGGLLSNSGSYRDATQLQQHYHTQQARNSVISSNAP
SNSNPSNNLLLPSPSASSPANSSTTLPPLTPNTQLHAPSRPPPSSSLGLGLGLGLGKGGI
TGSPAVSQMSGLGLSGMPASLNTMAGLLAGSTSAPYATAAAGSGTIGSPLAGKSVSSSSP
NSGTVGPMGGNTVSDRSTGLLGSAPCAIGVSGGILSLSGLGSGQLAVQGPPLVASSPIGG
LSPGSSLGAIGSIGGNSGSGAPSSSVGMGGGSTAITRPPSGQKQNGSTSYSAVVADSTPD
SALNSASQLQSSQPSSLTSTTNQPKDSGPSLLGPMILPTSSPSPSYSESKLPGSGMLNGP
LSYTQTSESKPQEPLSTLKSMAERAALGSGMEGEMLPLHLTTDIFPSTTLPPGPPSAPQQ
PSLSEVSIPPSLGVCPLGPVPLSKDQLYQQAMQESAWTHMPHPSDSERIRQYLMRNPCPT
LPFHHQVPPPHSDSVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMW
FQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atggctgataaaaggaaacttcaaggtgaaatagatcgatgtttgaaaaaagtaacggaa
ggcgtggaacagtttgaagacatttggcaaaagcttcacaatgcagccaacgctaaccag
aaggagaagtatgaagcagacctcaagaaagagattaaaaaactacagcgtcttcgagac
cagatcaagacgtgggtggcctccaacgagattaaagacaaaaggcagctagtggagaat
cgcaaactgattgagacgcaaatggagcggttcaagatcgtggagcgagagaccaagaca
aaggcgtactcgaaggaggggctgggcttggcacagaaggtggacccggcccaaagggag
aaagaggaggtcggcaattggctaacgaatacaatagacactctgaacatgcaggtggac
cagtttgagagcgaagtggagtccctctcagtccagactcgaaagaagaagggagacaaa
gagaaacaggaccgcatcgaagagctgaaacgcttcatcgaaaaacaccggtaccacatc
cggatgctggagaccatcctgcgcatgctggacaacgacaccttgccggtggactccatc
cgcaagatcaaggacgacgtggagtactacatggactcgtcgcaggaccccgacttcgag
gagaacgagttcctctacgacgacctggatctggaggagctccctacctctccctctgtc
tccccccatccatctcttgtctctctagccgggtcactggtggccacgtccccgccgggc
caatcgctcctggacgacgatctcttccatcagatctccagcggcacgcctacctccacc
acttcctcctcgcccatccctccctcgtccgcaacttacactacggagaactctgaagat
gacaagaaaaggggacgttcgacagacagtgaagtcggtcagctgtgctgcaccaggagt
ggttttgaagtaatgccttttataaaatttcagtcgcctatcaagaacggcaacccctct
tcgtcgttgtcctcctcctcctcttcatcctcctcttcatcctctgcctcctcgggagcc
tcctcatcctcgctggcgaccatcgccggggttggcctgccggtcactgggggcaacagc
ctcctgggcaacatgggaggtctcctctccaactctggcagctacagagacgctacccaa
ctgcagcagcattaccatacccagcaggccagaaactcagtcatctcctccaacgccccc
tccaactccaacccttcgaacaacctcctcctccccagcccctccgcttcctcacccgcc
aactctagcacaaccctccccccactcacgcccaacacccagttgcatgctccgtcaagg
ccgccgccgtcctccagcttggggcttgggttgggcttgggccttggtaaaggcggcatt
acggggtcaccggccgtcagccagatgtcgggccttggcttgtcggggatgccggcatcc
ctaaacaccatggccgggctcctggcgggctcaacttcggccccctacgccacggcagca
gcaggctccggaaccatcggaagccccctagcagggaaaagcgtcagcagtagcagcccg
aactccggcacagtgggaccgatgggcgggaacactgtcagcgatcgatccacgggcctg
ttgggctctgcgccctgtgcaattggtgtcagcggtgggatcctcagcctaagcggcctt
ggctcagggcagttggcggtccagggccctcccctggtggcctccagtcccataggaggc
ctgtcccctggaagcagcctgggagccataggaagcattggagggaactctggttcaggc
gcgccaagcagcagcgtgggcatgggaggaggaagcacggcaatcacaaggccacccagt
ggacagaagcagaatggtagcactagttacagtgctgtagtagcagacagcacacccgat
tccgccctcaatagtgccagccaattacaaagcagccaaccctcgtctttgacctccacc
accaatcagcctaaagacagtggccccagcctcttagggcccatgattcttcccaccagc
tctccctcgccctcctacagcgagagtaaacttccaggcagcggtatgctcaacgggcca
ctctcctacacacagacctctgaaagcaagccccaggagcctctgagcactctaaagtct
atggcagaacgagcggcactgggctcaggaatggagggagagatgcttcctctgcacctc
accacagacattttccccagcactacattgcccccggggcctccctcggccccccagcag
ccctcgctttcagaggtcagcatccccccatcgctgggcgtgtgcccactcgggcctgtg
cccctgtccaaagaccagctgtaccagcaggccatgcaggaatcggcatggacgcacatg
ccccacccctccgactcggagaggatcaggcagtacctgatgaggaacccatgtcccacc
ctgcctttccaccaccaggtgccacccccccactccgactctgtagagttctaccagaga
ctgtccacggagacactgttcttcatcttctactacctagagggcaccaaggcccagtat
ctggcagccaaggccttgaagaagcagtcgtggcggttccacaccaagtacatgatgtgg
ttccagaggcacgaggagcccaagaccatcacagatgagtttgagcaggggacgtacatt
tactttgactacgagaagtggggacaacggaagaaggagggattcacgtttgagtacagg
taccttgaggaccgagacctccagtga
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