KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112229862
Entry
112229862         CDS       T05605                                 
Name
(RefSeq) splicing factor U2AF 65 kDa subunit isoform X1
  KO
K12837  splicing factor U2AF 65 kDa subunit
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:otw00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112229862
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:otw03041]
    112229862
Spliceosome [BR:otw03041]
 Complex A
  U2 snRNP components
   U2 related factors
    112229862
 Complex B
    112229862
SSDB
Motif
Pfam: RRM_1 RRM_occluded RRM_7 Transformer
Other DBs
NCBI-GeneID: 112229862
NCBI-ProteinID: XP_024251732
LinkDB
Position
LG31:6892511..6910036
AA seq 474 aa
MSDFDEFERLLTENKKERDKENRHGWRTPSRSLSRERKKRCRERRKSRESRGNSKERRRH
RRSIQTQKQSQETVVSRSPALHREKKKKVRKYWDVPAPGFEHITPLQYKAMQAAGQIPAT
ALLPTMITPEGLPPAPTSVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMCLGGL
TQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGM
SESPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATAL
SKGYAFCEYVDVNLNDQAIAGLNGMQLGDKKLLVQRASVGAKNAALTGMNQTPVTLQVPG
LMPTSMASLGGLPTEVLCLMNMVAVEELLDDEEYEEIVEDVRDECGKYGQVKSIEIPRPV
DGLEVPGTGKIFVEFMTLFDSQKAMQALTGRKFANRVVVTKYCDPDAYHRRDFW
NT seq 1425 nt   +upstreamnt  +downstreamnt
atgtcggattttgatgaattcgagagattgttgactgaaaataagaaagagcgggacaag
gagaatcggcatgggtggcgtaccccgtcccgcagtctcagccgagagaggaagaagagg
tgccgggaaaggaggaagagcagggaaagccgtggcaacagcaaggagcgtcgtcgacac
aggcgcagcatacagactcaaaaacaatcccaagagactgttgtgagtcgctctccagct
ctgcacagagagaagaagaagaaagtgaggaagtactgggatgtcccggcaccaggcttc
gagcatatcacacccctgcagtacaaggctatgcaggctgctggccagatcccagccacg
gccctgctgcccaccatgataactccagaggggctgccccccgcccccacctctgtaccc
gtggtgggcagccaaatgaccaggcaggccaggaggctctacgtaggcaacataccgttt
ggcatcacagaggaagcaatgatggatttcttcaatgcccagatgtgccttggcggactc
acccaggcccctggcaaccctgttctagctgtacagataaaccaggacaagaactttgcc
ttcctcgagttccgctcggtggacgagacgacccaggccatggcctttgacggcatcatc
ttccagggtcagagcctgaagatcagacggcctcacgactaccagcccctgcccggcatg
agtgagagccccagtgtctatgtaccaggagtggtttcgaccgtggtgccagactcagcc
cacaaactcttcatcggtggcttgccaaattaccttaatgatgatcaggtaaaagagcta
ttgacctcatttggccctctgaaggccttcaacctggtcaaagacagcgccacggccctc
tccaagggctacgccttctgtgaatatgtggacgtcaatttgaacgaccaggcaattgca
gggttgaatgggatgcagctgggggacaagaagctcctggtccagagagccagtgttggg
gccaagaacgcagctctgacgggtatgaaccagaccccggtgaccctccaggtgccaggc
ctaatgcccacctccatggcttcgctgggtggcctacccactgaggtcctctgcctgatg
aacatggtggctgtggaggagctgctggatgacgaggagtacgaggagatcgtggaggac
gtccgggatgagtgcggcaagtacggccaggtgaagagcattgaaatcccccggcctgtg
gatggcctggaggtcccaggcactgggaagatctttgtggagttcatgacgctgtttgac
tcccagaaggccatgcaggcgctgacaggcaggaagtttgccaacagggtggtggtgacc
aagtactgtgacccagacgcttaccaccgccgagacttctggtag

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