Oncorhynchus tshawytscha (Chinook salmon): 112229923
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Entry
112229923 CDS
T05605
Name
(RefSeq) retinoic acid receptor beta isoform X1
KO
K08528
retinoic acid receptor beta
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112229923
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
otw03310
]
112229923
Transcription factors [BR:
otw03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
112229923
Nuclear receptors [BR:
otw03310
]
1. Thyroid hormone like
1B. Retinoic acid receptor (RAR)
112229923
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
DNA_ligase_A_N
Motif
Other DBs
NCBI-GeneID:
112229923
NCBI-ProteinID:
XP_024251842
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All DBs
Position
LG03:20671138..20688734
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AA seq
452 aa
AA seq
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MFDYMDFLAVGPGETLDFYTASPCMLQEPSQTACFTGLTETDWQVHRVAQSVETQSSSSE
DLFASPLSPLPPPRTYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSVQKNMVYTCHRDSN
CIINKITRNRCQYCRLQRCFAAGMSRECVAHKGNHTRAVRNDRSKRKEKKETPKMTIIET
YELTAELGCIVEKICRAHRETFPSLCQLGKYTTNSSSDTRIQLDLGLWDKFSELATKCII
RVVEFAKRVPGFTGLTITDQITLLKAACLDILILRICTRYTPDQDTMTFSDGLTLTRTQI
HNAGFGPLTDQVFTFAGQLLPLEMDDTESGLLSAICLVSGDRQDLEEPSKVEVLQEPLLE
ALKIYSRKRRPSMPLMFPKVLMKITDLRSISAKGAERVVTLKMEIPGSMPPLIQEMLEEM
ENLEKQKHSEEEQRADKNITPTHTHSPCPHST
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgtttgactatatggattttctcgcagttggtccaggagaaacgctggacttctatact
gcaagtccttgtatgctccaggaaccatctcaaaccgcatgcttcactggactaacagaa
acggattggcaagttcatcgggtcgcgcaatctgtggaaacccagagctccagctcagag
gacctgttcgccagtcctctctcacctctgccccctcctcgcacctacaaaccctgcttc
gtgtgccaagacaagtcctcaggctatcactatggcgtcagtgcttgtgagggctgtaag
ggtttcttccgtagaagtgtccagaagaacatggtttacacgtgccaccgggacagtaac
tgcatcatcaataagatcaccaggaaccgctgtcagtactgccggctacagaggtgcttc
gccgcgggcatgtccagggagtgtgttgcccacaagggaaatcacaccagagctgtcagg
aatgaccggagcaagaggaaggagaagaaggagactcccaagatgaccatcatcgagaca
tatgagctgacagcagaactgggctgtatagtggagaaaatctgtagggctcatagagag
accttcccttccctctgccagttgggcaaatacactacaaactcaagctcagacactagg
atccagttggacctggggctgtgggataagttcagtgagctggccaccaaatgtatcatc
agggttgtggagtttgccaaacgggttcctggtttcaccggcctgactataactgaccag
atcaccctcctcaaagcggcctgtctggacattctgattctgcggatctgtacaaggtac
actcctgaccaggacactatgaccttctcagacgggctgaccttgacccgtacacagatc
cacaacgctggctttggcccgctcacagaccaggtgttcaccttcgccggccagctgctg
cccttggagatggatgacacagaaagtggcctcctcagtgccatctgcctggtgtctgga
gatcgccaggacctggaggagccgtctaaggtggaggtcctgcaagagcccttactggag
gccttgaagatctactcccgtaaacgccggcccagcatgcccctcatgttccccaaggtc
ctcatgaagataaccgacctgcgcagcatcagcgccaaaggagctgagcgagtggtgacg
ttgaagatggagatcccaggttccatgcctcctcttatccaggagatgctggaggagatg
gagaacctggagaagcagaagcattctgaggaggagcagagagcagacaagaacatcaca
cccacacacacacactctccatgtccacacagtacatag
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