Oncorhynchus tshawytscha (Chinook salmon): 112229944
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Entry
112229944 CDS
T05605
Name
(RefSeq) helicase SKI2W isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112229944
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112229944
Enzymes [BR:
otw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112229944
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
112229944
mRNA degradation factors
3'-5' decay
Ski complex
112229944
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
Helicase_C
DEXQc_Suv3
ResIII
MTR4-like_stalk
DUF3516
HTH_23
Motif
Other DBs
NCBI-GeneID:
112229944
NCBI-ProteinID:
XP_042165954
LinkDB
All DBs
Position
LG31:complement(4333700..4364768)
Genome browser
AA seq
1250 aa
AA seq
DB search
MERIDLPAVGPTDLPISLLEMGCSGRFELITHPHPNDQPLPPQSSLPHGLPPTSVSLETE
VEKRFLRDPAWLPIHDTDAAFHRFLKLAERDVHIDSLLHCALSPLHSGISVVRDPTTGML
LDFTEVLLGDTGISAKNSMSLQRPPNPNPSESLRGSNTNYPFLPGGMEELTLEQIKKKSE
LEEDIDFEKELLTVPPGLKVGMDFSDKDAKTTKGEINLLSLLSTFDDIIDSQPEAEEKEK
GHRSGNAPKLPRTNSLEDLGIKDSPSTPGTTSTEKKDGGTTKPAGDQEEKKRWAIPINIT
SPCGDFYKRIPNPAFKYPFELDVFQKQAVLRLEAHESVFVAAHTSAGKTVVAEYAIALSQ
KHMTRTIYTSPIKALSNQKFRDFKTTFGDVGLLTGDVQLRPEASCLIMTTEILRSMLYNG
SEVIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNAVEFSEWIGRI
KKKHIYVISTAKRPVPLEHYLYTGNSTKTQKEMFLLLDPTGNFQTKGYYAAIDAKKERTS
KHTQSFGTKNPSQNTTPSQDRAVWLSLLHFLSQRQQTPVVAFTFSRTRCDDNARSLASMD
LTSSVEKSEIHSFFQKSLRRLRGGDRQLPQILLIRDLLKRGIGVHHSGILPIMKEVIEML
FSRGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGLD
ATGTVIILCKSGVHDMGDLNVMMLGKPTVLQSQFRLTYTMILNLLRVEALRVTDMMRRSF
SESHRDTQAHEQQIGQLKQTLSSLPPLDTEGQLSDLLPYYYTVTELRLTAEALQCAVLGS
VNGLKALSVGRVVVVNNKQHFNALGVILQVSSDSVNRTFIALIICEKGNEEGIGDSPNGS
AFPHLYNTALFTPEGPCSHTVQKLKLQDISAITVKTLKVIPDRIIDNYNKRQQLRFRLDP
PGQAISTATQELLRLAEANPGGMMTLDPVNDFQLKSVDVVEGTMRLRVLQDSLKDFSCIH
SPTFSEQFLRVQERMSVQEELDKLLFLISDQSLSLLPEYHQRIKVLQSLQYVDSSGAVQL
KGRVASQISSHELLLTELLFENALSPLAPEESAALLSCLVFQQKTQVEPHITNTLKEGIE
RVLAVAQRIGELQRDCGITQTAEEYVGQFKFGLTEVAYCWARGMPFAEIAQLTDVQEGTV
VRCVQRLDEVLKEVRQAARIVGDSVLGSKMEKASLAIRRDIVFTASLYTH
NT seq
3753 nt
NT seq
+upstream
nt +downstream
nt
atggaaagaatagatctgcccgctgtgggccccacagacctccctatatccctgctggag
atgggttgctctggcaggtttgagctcatcacacatccacatcccaatgaccagcccctg
cctccacaaagttcgctccctcatggactccctcccactagtgtgagcctggagacagag
gtagagaagcgctttctacgcgaccctgcctggcttcccattcacgataccgacgctgcc
ttccataggtttctgaagctggctgagagagatgttcatatagactctcttctccattgt
gctctgtctcctctgcactctggcatctcagtagtcagagatccaacaacaggaatgttg
ttggacttcactgaggtgttactgggggacacaggcatctctgctaagaattctatgtcc
ctgcaacgtccaccaaaccctaatccctctgagagcctacgaggaagcaacaccaactac
ccgtttttgcccggtggtatggaggagctgacactggaacaaatcaagaagaaatccgag
cttgaggaggacatagactttgagaaagagttactcacagtgccccctggactgaaagtt
gggatggacttcagtgacaaagatgccaaaaccacaaagggagaaatcaatctcctgtcc
ctcctgtccacctttgatgacatcatagactcccagcctgaggcagaggagaaggagaag
ggccacagaagtggaaatgcacccaaactgcccagaaccaacagcttggaagacctgggg
atcaaggactctccctctacacctgggaccacctctacagagaagaaagatggaggaacg
accaaaccagcaggggaccaggaggagaagaagagatgggcaatcccaataaacatcacc
tccccctgcggtgacttctacaaacgtatccctaaccctgccttcaagtatccctttgag
ttggacgtgttccagaagcaggcagtattgaggctggaggcccatgagtctgtgttcgtg
gcagctcacacatcagctggcaaaaccgtggtggcagaatacgccatagcactctcacag
aagcacatgaccaggaccatctacacctcccccatcaaggcgctgtccaatcagaagttc
cgggacttcaagaccacctttggggacgtggggctgctgaccggggacgtccagctgaga
cctgaagcctcctgtctcatcatgaccactgagatattgaggtccatgctctataacggt
tcggaggtcatccgagatttagagtgggtgatctttgacgaggttcactacatcaatgat
gctgagagaggagtggtgtgggaggaggttctgatcatgttacccgaccacgtcagcatt
attcttctgagtgccactgtccccaacgctgtggagttcagtgagtggatcggacgcatt
aaaaagaagcacatctatgtgatcagcacagcgaagagacctgtgcctctggagcattac
ctgtacacaggcaacagcaccaagactcagaaggagatgttcctactgctggaccctacg
ggcaacttccaaaccaaagggtactacgctgctatagatgccaaaaaggaacgcaccagt
aaacacacacagtcttttgggacgaaaaatccatctcagaacactacacctagtcaggac
cgggcagtgtggctttccctcctccacttcctgtcccagcgccagcagacccccgtggtg
gcgttcaccttctccagaacgcgctgcgacgacaacgcccgctctctagcctccatggac
ctcaccagctcagtggagaagagcgagatccactcctttttccagaagagcctgagacgc
ctcaggggaggggaccgccagctgccccagatcctgttgataagggacctactgaagagg
ggtatcggtgtgcatcacagtggcatcctgccaatcatgaaggaggtcattgagatgctg
ttctcgcgggggctagtaaaggttctgtttgccactgagacgtttgctatgggagtgaac
atgcctgcgaggacagtggtgtttgacagcatacggaaacacgatggcaccggcttcaga
aaccttctgcctggtgagtatatccagatggctggtagagcgggtaggagaggtctggac
gccacaggcactgtcatcatcctctgcaagtcaggggtacatgacatgggggacctaaat
gtcatgatgctggggaagcccacagtgctgcagtcccagttcaggctgacctacaccatg
atcctcaacctgctgcgtgtggaggccctccgagtcaccgacatgatgaggaggagcttc
tctgagagccacagagacacacaggcccatgagcagcagattggtcagttgaaacagact
ctgtcctctctccctcctctggacacggagggtcagctgtctgacctactgccgtactac
tacactgtcactgagctacgcctcactgctgaggcgctgcagtgtgctgttctggggtct
gtgaatgggttgaaagctctctccgtgggacgagtggtagtggtcaacaacaaacagcac
ttcaacgccctcggagtcatcctacaggtttccagtgactcagtgaatcgtacgtttatt
gctctcatcatctgtgagaaaggcaatgaggagggaataggagacagccccaacggcagt
gccttcccccacctctacaacactgccctctttacacctgaaggtccctgcagtcacacg
gtccagaagttgaagctacaggacatctcagccatcacagtcaagaccctgaaggtgatc
cctgaccgaatcatcgacaactacaacaagaggcagcagctgcgcttcaggcttgatcct
ccgggtcaagccatctccacggcaacccaggaactcctgcgattggcggaggccaaccca
ggcgggatgatgacccttgacccagtgaacgacttccagctgaagagtgtggatgtggtg
gagggcaccatgaggctgcgtgtgctgcaggacagcctgaaagacttcagctgcatccac
tcacccaccttctcagaacagtttctgcgggtgcaggagagaatgagtgttcaggaggag
ctggacaaactgctcttcctcatctcagaccagtccctgtctctactgccagagtaccac
cagagaatcaaggtgctccaatccctgcagtacgtggacagtagtggtgcggtgcagctg
aagggcagggtggccagtcagatcagtagccatgagctgcttctcacagagctactgttt
gagaacgccctgagccccctggcccctgaggagagcgccgccctactgtcctgtctggtc
tttcaacagaagacccaggtggagcctcacataaccaacacactgaaggagggtattgag
agagtgctggcggtggcccagcgtattggggagctgcagagggactgtgggataacccag
acagcggaagaatatgtgggccagttcaagtttggcctgaccgaggtggcctactgctgg
gccagaggcatgccatttgcagagattgctcagttaacagacgtccaggagggcacggtg
gtgcgctgcgtccagagactagacgaggtgctgaaggaggtgcgccaggcagcccgcatc
gtgggagactcggtcctgggcagcaagatggagaaggcctccctggccatccgcagagac
atcgtgttcactgcctcgctctacacacactga
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integrated database retrieval system
