Oncorhynchus tshawytscha (Chinook salmon): 112230178
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Entry
112230178 CDS
T05605
Name
(RefSeq) transcription activator BRG1 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112230178
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otw03021
]
112230178
03036 Chromosome and associated proteins [BR:
otw03036
]
112230178
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
112230178
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
112230178
Chromatin remodeling factors
BAF complex
112230178
PBAF complex
112230178
GBAF(ncBAF) complex
112230178
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
BRK
HSA
QLQ
ResIII
DEAD
HDA2-3
Motif
Other DBs
NCBI-GeneID:
112230178
NCBI-ProteinID:
XP_042174647
LinkDB
All DBs
Position
Unknown
AA seq
1671 aa
AA seq
DB search
MPWRGLPWRETAMERTGMERTGMERTGMERTAMERTAMERTAMERTAMERTGMERTGMER
TGMHEKGMSEESRFAQMKGMPMRQGGHSGMGPPPSPMDQHSQGYHSPLGGSDHSSPVPSN
GPPSGPLQPSSAGPNSSDTSSNPDSQTLGGQNQQQNRPGGPQQSGSGPGPHGPSPGPTTP
GGPGGGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMGCSPGMQGPGPG
QGGLGQPMPSLAPGGPGGVGPGPGGPMGQGYSRAHGMMGPNMPPPGPSGPTGMQGQNPNG
TPKSWSEGPMVNAAAPSNAPQKLIPPQPTGRPSPAPPSIPPAASPVMPPQTQSPGQPVQP
SPMVPHHAKQNRITPIQKPHGLDPVEILQEREYRLQARITHRIAELENLPGSLAGDLRTK
ATIELKALQLLNFQRQLRQEVVVCMRRDTALETALDAKAYKRSKRQSLREARITEKLEKQ
QKIEQERKRRQKHQEYLSIILAHAKDFKEYHRSITAKIQKATKAVATYHANTEREQKKEN
ERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRAHKLVQALKE
KKKKRKKKKKLENAEGQTPVLGPDGEPLDETSQMSDLPVKVIHVESGNILTGADAPKAGQ
LDTWLEMNPGYEVAPRSDSEDSGSEEEEEEEEEPQPAVPPVVVLPVLVGLEEKKKKIPDP
DSEEVSEVDVRHIIEHAKQDVDDEYNSAEAAFARGLQSYYAVAHAVTERVEKQSTILING
QLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMENKRVNGPFLIIVPL
STLSNWVYEFDKWAPSVVKVSYKGSPQARRAFIPQLRSGKFNVLLTTYEYIIKDKQVLAK
IRWKYMIVDEGHRMKNHHCKLTQVLNTHYLAPRRVLLTGTPLQNKLPELWALLNFLLPTI
FKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKV
EYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMF
QQIEESFSEHLGFSGGIVSGLDLYRASGKFEVLDRILPKLRATNHKVLLFCQMTSLMTIM
EDYFAYRNFKHLRLDGTTKAEDRGMLLKAFNDPASQYFIFLLSTRAGGLGLNLQSADTVV
IFDSDWNPHQDLQAQDRAHRIGQLNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAG
MFDQKSSSHERRAFLQAILEHEEQDEVGAPGGVWKSGGSWEEDEVPDDETVNQMIARSEE
EFDHFMRMDLDRRREDARNPRRKPRLMEEDELPTWIMKDDAEVERLTCEEEEEKMFGRGS
RQRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRHKKTTRKRKRDRDDLPGPSSSSSGGR
RSRDKDEDGKRQKKRGRPPAEKLSPNPPALTKKMKKIVDAVIKYKDSSNGRQLSEVFIQL
PSRKELPEYYELIRKPVDFRKIKERIRSHRYRSLGDLERDVMLLFQNAQTFNLEGSLIYE
DSIVLQSVFTSLRQKIEKEEDSEGEDSEEEEEDLDEGSESECESSLKKGTRSVKVKIRLG
RREKSSDRGKGRRRLGRTRAKPVVSDDDTEEEQEEVRGEEERSPSGTDEES
NT seq
5016 nt
NT seq
+upstream
nt +downstream
nt
atgccatggagaggtctgccatggagagaaactgccatggagaggactggtatggagagg
actggtatggagaggactggtatggagaggactgccatggagaggactgccatggagagg
actgccatggagaggactgccatggagaggactggtatggaaaggactggtatggagaga
actggtatgcatgagaagggcatgagtgaggagtcccgctttgcccagatgaagggcatg
cccatgagacagggagggcacagtggcatgggccctcctcccagccccatggaccaacac
tctcaaggctaccactccccactcggcggctctgaccactccagccccgtcccttccaac
gggcccccctctggccctctccaaccctctagcgctggcccaaattcctcagacacctcc
tccaacccagactcccaaaccttggggggtcagaaccagcagcagaaccggcccggtggg
ccccagcaaagtggctccggccctggccctcatggccccagccctggccccaccacccct
ggtggccccggaggaggccctactcctttcaaccagaaccagcttcaccagctgcgggcc
cagatcatggcctataagatgctggccagggggcagccactaccggaccatctccagatg
gctgtccaggggaagaggcccatggggtgcagcccagggatgcagggtccggggccaggg
caggggggactggggcagcccatgcccagcctggctcctggaggtcctggaggtgtggga
ccaggaccaggaggacccatgggccagggctacagcagagctcacgggatgatgggaccc
aacatgccccctccaggcccctctggtccaaccggcatgcagggtcagaaccccaacgga
acccccaagtcctggtctgaaggtccgatggtaaacgccgccgccccctctaacgccccc
cagaagttgatccctccccagccgacgggccgtccctcccccgctccaccctccataccc
cctgcggcctccccagtcatgcccccccagacccagtcccctgggcagccggtccagccc
tcacccatggtgccccaccatgccaagcagaaccgcattacccccatccagaaaccccac
ggactcgacccagtggaaatactgcaggagagggagtacagactgcaggctcgtatcacc
catcgtatagctgagttggagaacctccctggctctctggctggagacctgaggaccaag
gccaccatcgaactcaaggccctccagctgctcaacttccagagacagctgcgtcaggag
gtagtggtgtgtatgcgtagggacaccgctctggagacagctctggacgcgaaggcctac
aagaggagcaagcgccagtccctacgagaggctcgcatcacagagaaactggagaaacag
cagaagatcgaacaggagcgtaaacgtcgacagaaacaccaggagtatctgagcattatc
ctggcccacgccaaagactttaaggagtaccaccgctccatcacagctaagatccagaaa
gccaccaaggccgtggccacataccacgccaacacagagcgcgagcagaagaaggagaac
gagcgcatcgagaaggagaggatgaggaggctgatggctgaggatgaggagggctaccgt
aaactgattgaccagaagaaggacaagcgtctggcctacctgctgcagcagacggatgag
tacgtggccaacctcactgagttggtccgggctcacaagctggtacaggccctcaaagag
aagaagaagaagaggaagaagaagaagaagctggagaacgctgagggtcagactcctgta
ctgggacctgatggagaacctctagatgagacgtcccagatgagtgacctaccagtgaag
gtgatccacgtggaaagtggtaacatcctgacaggggcggacgctcctaaagctggacag
ctggacacatggctggagatgaaccctgggtacgaggtggcccctcgctctgacagtgaa
gacagtggatcggaagaggaggaggaggaagaggaggagccccagccggcagttcctcca
gtagtggtcctcccagtgttagtggggttagaggagaagaagaagaagatcccagaccca
gacagtgaagaagtatcagaggtggacgtacgacacatcatagagcacgctaaacaggat
gtggatgatgagtataacagtgcggaggcagcgttcgctcggggactccagtcttactac
gctgtcgcccatgctgtcactgagagagtggagaaacagtccactatactcatcaacgga
caactgaaacagtaccagattaaaggtctggagtggctggtgtctctctacaacaacaat
ctgaatggtatcctggctgatgagatgggactaggaaagaccatccagaccatcgctctc
atcacgtacctgatggagaacaaacgagtcaatggacctttcctcatcatagtaccgctc
tcaactctctctaactgggtgtatgagtttgacaagtgggctccgtctgtagtgaaagtc
tcctacaagggttcccctcaggccagaagggccttcatcccccagctacgcagcggcaag
ttcaacgttctcctcactacctatgagtacatcatcaaggataaacaggttctagccaag
atccggtggaagtacatgatcgtggatgagggccaccggatgaagaaccaccactgtaag
ctgacccaggtcctcaacacccactacctggcccccaggagagttctcctaactgggaca
ccgctccagaacaagctgcctgagctctgggccctgctcaactttctcctgcccactatc
tttaagagctgcagtacctttgaacagtggttcaatgcaccattcgctatgactggagag
aaggtggatctaaatgaagaggagaccatcctgattatccgtcgcctccacaaggtgctc
cgccccttcctgttacgcaggctcaagaaggaagtagaggctcagctaccggaaaaggtg
gagtatgtaataaagtgtgatatgtcagcgctccagagggttctgtacagacatatgcag
gccaagggagtcctactgacagacggctctgagaaggacaagaagggtaaaggaggtacc
aagactctgatgaacaccatcatgcagttgaggaagatctgtaaccatccctacatgttc
caacagatagaggaatctttctctgagcatttaggattttctggagggatagtgagtggt
cttgacctgtaccgagcctcggggaagtttgaggtgctggaccgtatcctgcccaagctg
agggccaccaaccacaaggtgttgttgttctgtcagatgacctcgctcatgaccatcatg
gaggactacttcgcctaccgcaacttcaagcacctgcgtctggacggcaccaccaaagca
gaggacaggggcatgctgttgaaggcgtttaacgacccagcctcccagtacttcatcttc
ctgctcagtaccagagccggcgggctgggcctcaacctgcagtcagctgacaccgtggtc
atcttcgactctgactggaaccctcaccaggacctgcaggcccaggaccgtgcgcaccgc
atcggccaactgaacgaggtccgcgtcctgcgtctctgcaccgtcaactccgtagaggag
aaaatcctggcggcggccaagtacaaactcaacgtggaccagaaggtcatccaggccggc
atgttcgaccagaagtcatcgagccacgagcgccgggctttcctgcaggctatcctggag
cacgaggaacaggacgaagtcggggccccgggcggcgtgtggaagtctggggggtcttgg
gaggaggacgaggtgccagacgatgagacggtcaaccagatgatcgccaggagcgaggag
gagtttgaccacttcatgcgtatggacctggacaggaggcgtgaggacgctcggaacccc
cgccgtaagccccgtctgatggaggaggacgagctgcccacctggatcatgaaggatgac
gcagaggtggagagactcacctgtgaggaggaagaggagaagatgttcgggagggggtcc
cgccagcgcaaggaggtggattacagtgactcactcaccgagaagcagtggctcaaggcc
attgaggaaggcacgttagaggagatcgaggaggaggtgcgtcacaagaagaccacccgg
aagcgaaagcgtgaccgcgatgacctccctggcccctcctcttcctcctcggggggcagg
cggagccgggacaaggacgaggacgggaagagacagaagaagaggggacgcccccccgca
gagaaactctcccccaacccccccgctctcaccaagaagatgaagaagatagtggacgct
gttattaaatacaaagacagcagtaatggtcgtcagctgagtgaggtcttcatccagctg
ccctcgcgcaaagagctgccagagtactacgagctcatccgcaagcctgtcgacttcagg
aaaatcaaggagaggatccgtagccacagataccggagtctcggagacctggagagagat
gtgatgctactctttcagaacgcacagaccttcaacctggagggatcactgatctacgag
gactccatcgtgctccagtcggtgttcaccagtctgagacagaagatcgagaaggaggag
gacagcgagggagaggacagtgaggaagaggaggaggacctggacgaaggctcagagtca
gagtgtgagtcatcactgaagaaaggaacccgctcagtgaaggtgaagatccgtctggga
cggagagagaagagtagtgaccgggggaagggtaggagacgtctgggacgcacccgagcc
aaacctgtagtcagcgacgacgacactgaagaggagcaggaggaggtgagaggagaggag
gaacgctcccccagtggcacagatgaagaatcctaa
DBGET
integrated database retrieval system
