Oncorhynchus tshawytscha (Chinook salmon): 112230263
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Entry
112230263 CDS
T05605
Name
(RefSeq) VPS10 domain-containing receptor SorCS1-like
KO
K27081
VPS10 domain-containing receptor SorCS1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112230263
Membrane trafficking [BR:
otw04131
]
Protein recycling
Others
Others
112230263
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sortilin-Vps10
Sortilin_C
PKD
PKD_4
PSII_BNR
Motif
Other DBs
NCBI-GeneID:
112230263
NCBI-ProteinID:
XP_042166702
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Position
LG32:12837061..12992141
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AA seq
1288 aa
AA seq
DB search
MERGVRLCPIWHTSVFWFLLLIMLSFFLAAKSEITCRSCQPGDKGRIMELLLKTDTREFA
TGHGGEVIGNGDGTTASRSLNSASAETQQLDCAAGSDACIQGKYIYSRRKRNTDILLRSK
NALLDGGMQYGGGKQRKFTPRGEYKVSNLKMNRHVGNTDVGKARADLIPGVSHKHRVRRD
SPGANIGDVKVKSSGLPQRRETLPLSYSREGITSRTGRSRVTRSELRWSNEDRRSASSRQ
DELKLTSSTFALTGDSSHNQAMVHWSGQNSSVILMLTKLFDFNLNSVTESSLWRSTDYGT
TYQKLNEKVGAKTILSYLYVSPNNKRKIMLLTDPEVESSLLISSDEGATYQKYRLSFYIL
SLLFHPEQEDWILAYSHDQKLYSSVEFGRRWQLVHERVAPNRFYWSKTGLDKEPGLIHLE
TIISEGKALYVTCKLQNCTEANKGKPFPGYIDPNSLVVQDEYVFVQVSTGGRPIYYVSAK
REVFTPMKLPKYTLPKDLHVISTDENRVVAAVQEWNQNDTYNLYVSETGGVFYTLALENV
VSSMGHEGNVMIDLYEVAGIKGMFLANKMTDSVVKTYITYNRGRDWRLLQAPTADLRGNS
IRCELPYCSLHLHLHVSANPYTSGNIESKDSAPGIIVASGSIGAELTTSNVSMFITSDAG
NTWRQIFDEEYSVLYLDQGGALVAIRHTPLPIRHLWMSFDEGREWNKYSFTMSPLFVDGL
LGEPGEETLIMTIFGHVSHRSEWQLVKIDFRSIFNRRCTEGDYQTWHLHNRGEPCIMGVK
RIYRKLKPIARCVMGKTYSVTMTSAPCDCTEADFECDYGYDRRSDGKCTPAFWFLPSSMS
RSCTTGTTFINSTGYRKVVSNNCTAGVIAEYTARRQHCPTQAPKGLHLVTSEGKLTATLG
TNVTFLVFLEEGDGARTSIMVDFGDGHALTYSNVSSIENGVKHVYKAVGIYRVTATGENR
LGSESVVLYLHVTCQLEYIHLSAPFVAVKSKEVNLTAVLWPSQVGTVTYIWWFGNNTEPI
ITLEGSVACTFSREGVNTVTVQVSAGNAILQDRKAIAVHEYFRSHLLAFSSNLDDHNPDV
AEWRLDVSRVIKNSMVKATGVTPERLLVSVLPGLPTAAEFFLLPDKELTEGKPDKNTAHL
DQLTEIILSALNQNLVQFTLRPGVQVTVYAAHLSAAPLVDMSENHSGSAMLMLLSVVVLG
LAIFVVYKFKRKIPGLNVYAQMQNEKEQEMIQSPVSPTESTLVSPNTPRELVTSPELMDT
ELNTRPIGCIKSHAHVKFSTELPTYINI
NT seq
3867 nt
NT seq
+upstream
nt +downstream
nt
atggagaggggggtcagattatgccctatttggcacaccagcgttttctggtttctgctt
ttgataatgctatctttctttctagccgctaaatcagagataacttgcagatcatgtcag
ccgggagataaggggcgtattatggaattactgcttaaaacggacacacgagaattcgca
acagggcacggaggggaagttattggaaatggagacgggacaactgcttcacggagttta
aattctgcaagtgcggaaactcaacagcttgattgcgcagctggatccgatgcatgcatc
caggggaaatacatatactcaaggcgaaaacggaatactgacatactgctccgttccaag
aacgcactactcgatggaggaatgcaatacggtggtggtaaacagagaaaattcaccccg
cgcggtgagtacaaagtttccaacctgaaaatgaaccgtcatgtaggcaatacagatgtc
gggaaggctcgcgcagatttaattcccggcgtctcacacaagcaccgagttcgtagggac
agcccgggagctaatattggggatgttaaagtgaagtcctccggcttaccccagagaagg
gagacactgcctctgagttactcgcgagagggcatcacctcacggactgggcgcagcaga
gtgacacggtccgaattgcgatggagcaacgaggacagaagatcggccagttcgaggcag
gacgaactcaaactcaccagttcaaccttcgcattgaccggagattcctctcacaatcaa
gccatggtgcactggtctgggcaaaacagcagtgtgattctcatgctgaccaagctgttt
gacttcaacctgaacagtgtcacagagagctcgttgtggaggtcaaccgactacggaacc
acttaccagaagctcaatgagaaagtgggggcgaaaacaatcctcagctacttgtacgtc
agtcccaacaacaagagaaagatcatgcttctgactgacccggaggtggaaagcagcctg
ctgatcagctccgatgagggagccacctatcagaagtaccgcctcagcttctacatcctc
agccttctcttccaccccgagcaggaggactggatccttgcctacagccatgaccagaag
ctgtacagctcggtggagtttggaaggaggtggcaacttgtccatgagagggtggccccc
aatcgattctactggtcgaaaacgggtttagacaaagaaccgggcttaattcacctggaa
accatcatctctgaaggaaaggcgctgtacgtcacctgcaagctgcagaactgcaccgag
gccaataagggcaagccgttccctggctacattgaccccaattcccttgtggtgcaagac
gagtatgtgtttgtccaggtgtcaactggtgggcgtccaatctactatgtgtcagccaag
cgggaagtcttcacacccatgaagctacccaagtacaccttgcctaaggatctgcatgtg
atcagtacggatgagaaccgggtggttgcggcggtgcaggagtggaaccagaacgacacc
tacaacctgtacgtgtcagagactggaggggtcttctacaccctggccctggagaacgta
gtcagcagcatggggcacgagggcaacgtcatgatagacctgtatgaggtggcgggtata
aaagggatgttcctcgccaacaagatgacggacagcgtggtgaagacttacatcacctac
aacagagggagagactggaggctcctgcaggctcccactgctgacctgaggggcaacagc
atccgctgtgaactaccatactgttccctacacctccacctacacgtgtcggccaacccc
tacacgtcggggaatatcgagagcaaggactctgcccctgggatcattgtggcctcaggc
tccatcggagcggagttgaccaccagcaacgtgagcatgttcatcacctcggacgccggc
aacacgtggagacagatctttgatgaggagtacagtgttctctacctggaccaaggaggg
gccctggtggctataagacacactccactccccatccgacacctatggatgagtttcgac
gaggggagagagtggaataaatacagtttcaccatgtcgcccctgtttgtggacgggttg
ctaggggagccgggggaggagactctcattatgacgatctttggccacgtcagtcaccgg
tccgagtggcagctggtcaagattgacttcaggtccatcttcaaccggagatgtacagag
ggggattaccagacatggcacctacacaaccggggcgaaccatgcatcatgggagtgaaa
agaatctacaggaagttgaagcccatagccaggtgcgttatgggtaagacgtactcggtc
acgatgacctcggcgccctgcgactgcacagaggccgactttgagtgtgactatggctat
gataggcggagtgacggcaagtgcacccctgccttttggttcctcccatcgtccatgtcg
agaagctgcaccacggggactactttcatcaacagcactggctacaggaaggttgtgtcc
aataactgcacagcgggagtcatagcagagtacacggccaggaggcagcactgtcctacc
caggcccccaaaggcctgcacctcgtcaccagtgaaggaaagctgacagctacgctgggc
accaatgtcaccttcctggtgtttcttgaagagggcgacggagccaggacgagcatcatg
gtggacttcggggacggtcacgctctgacctactccaacgtgagctccatagagaatggg
gtcaagcacgtctacaaggctgtcgggatctaccgtgtgaccgctacaggagagaacagg
ctggggtcggagagcgtggtgctgtacctccacgtcacatgtcagctggagtatatccat
ctctccgctccctttgtggcggtgaagagtaaggaagtcaacctcactgctgtgctgtgg
ccgagccaagtgggaacagtcacctacatctggtggttcggaaataacactgagccgata
atcaccctggaagggagcgtggcatgcacgttctcccgggaaggcgtcaacactgtcacc
gtgcaggtgtccgctgggaacgccatcctgcaggaccggaaagccatcgctgtccacgaa
tatttcaggtcacatctactagccttctcatctaacctggatgaccacaaccccgacgtg
gccgaatggagactagacgtcagcagagtcatcaagaactccatggtcaaagccacaggg
gtgacaccggaacggctccttgtcagtgtcctaccagggttgcccacggcagcagagttt
ttccttctaccagacaaagagttaacggagggaaagccggataagaacacagctcattta
gaccagctcactgaaatcatacttagtgccctcaaccaaaacctggtccagttcaccctt
cggcctggggtccaggtcacagtatatgctgcacatttgtcagcagcgcccctagtggac
atgagtgagaaccacagcggctcggccatgctgatgctgctgtcggttgtggttctgggt
ttggcgatatttgtcgtctacaaattcaaaaggaagatcccaggcctcaacgtctatgcg
cagatgcagaacgaaaaagaacaagaaatgatccagagtccagtaagtccgacggaaagc
accctggtgtccccgaacactccgagggagctggtgacttctccggagcttatggacaca
gagttgaacacacggcccatcggatgcatcaaatctcacgcacatgtcaagttctcaacg
gaactccccacgtacatcaacatttaa
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