Oncorhynchus tshawytscha (Chinook salmon): 112230291
Help
Entry
112230291 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: trinucleotide repeat-containing gene 6C protein-like
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112230291
03036 Chromosome and associated proteins [BR:
otw03036
]
112230291
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112230291
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Gene silencing
piRNA pathway
112230291
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
M_domain
UBA_7
RRM_1
UBA
RRM_occluded
UBA_NBR1_C
THOC7
Mei5_like
Motif
Other DBs
NCBI-GeneID:
112230291
NCBI-ProteinID:
XP_042166757
LinkDB
All DBs
Position
LG32:complement(11448427..11514194)
Genome browser
AA seq
2028 aa
AA seq
DB search
MEENKKQDKTKKEAAQKQAADLKTKEPAKPSPGPLHYPTTCVTLPQASHPPPRPLQSEPM
GSAPPTTQQTPQQQTPPQPPSSSSGPRYPPREVPPRFRQQEHKQLLKRGQPLPAGALSSL
TVTPASDPLTPGAPASSSSTGKRHTDLPFQSGPGAQYENPHWGALPPATDRSSSTTSSSW
DQVIIDGSDTEAWPSISRSSDSRPANPSECATAADCTNPETSSNMSIAAGATSQQAHYPS
LKANATNMMQPGGGQGVGAIGSRGWGSGSGPITMGPTEGAKPDGLGPNMGRSGGAPGWNS
QPSFSLNLNPNANPSAWPVLGQEGAGGGPNPASLPPNGSLGNSSLGGEENNSSSTWGGMM
SPDAPSSNKNVSFSSMEHPNLNTDGQNSHHTKQPLSPIHGLPGWGGQSPTESSQLNGDAG
SSVWGNGDTKTSADSKNSGWDSAPSGGMSGWGHSGSGSGGGEGGWGKPSSGGGEAKRGWD
SSDGPAQDQQLSSWGQPTPAPTSEGSGSGGSEVRSHRRDRTGSEDGGPPPLPRQDLDPRV
LCNTGWGQTPVRQHTSWEMEEQRAANERKTSEMRGGAGGDTWKGSSSPSSGSPLDPRNGG
ANPNLGPSQRPGSGGSGGKSEGPSGWGGPPPSGWGEQPVNKAPNGSVSGWGEPMAQGHNT
TNNGPKSGVQSWGVPEGKSSPTWDDGPTKTQQSQSQSWGEGPKSSHGWGSGHGSGSRGSN
GSNGSNGGEWREPAEVKKNGSSSHMWEGEGGNGRGGGWKDSPRGGGGNGGGWASKPAPAV
GGGGWVETQHPNSPAPGWGSKPQESPNGPAPGWCSKPQESPNNPAPGWGSKPQESPNGPA
QGWGSKPQESPNGPAQGWGSKPLESTNGPAPGWGSKPQESPNGPAPGWGSKPQESPNGPA
PGWGSKPQESPNGNSGGVGTGGGSMGSWGGPASVRQSSNPGWGPGSSGAKPDPAMEPTGW
EEPSPPSIRRKMEIDDGTSTWGDPSAYNKTVNMWDRNNPTGGNGNQGNAPTQPPTSKSNG
SMAVNNSHNHSSVPPSNNNHHHMNHHHPHHGQPPPHSQHHGNNNGSPNTAAPHQGSGPQG
RPPMANPGWGELPSVQQPKPEMAWGEPAGPSPAVDNGTSAWGKPPGVPGGWGDGGHEPNG
PYRRGNNGPSGPAPCKPAPKSMQDGWGGGREEEMGMSSGQWDTDAGDMWNSPASQESSTS
CNSWGQPPKKGPPKGKMGNQPDEAWIMNRLIKQLTDMGFPRDPAEEALKSNDMNLDQAMS
ALLEKKTELDKRGMGMSDYNNGMNKPLGCRPQALSKDPSSDRSPFLDKDGGLSDDTPPSP
FLPSPVSLKLPLINNLQPGLALGSPGLNMQNLNNRQMQSGMLGSSGAALSRAMQQPPPQP
SVPPLGSSQPNLRAQVPQFLTPQVQAQLLQFAAKNIGLNPALLTSPINPQQMTLLYQLQQ
LQMAYQRLQIQQQMMQAQRNVSGPIRQQEQQVARTINNMQQQIQQHQRQLYQALLMKQQP
PAPTPXLHPSQGKSALDSFPGHPQAPGLSDLHTKEPQSSPNSYSPYPLSGLNPNMNVNCM
EVGGLSMKEPPQPQSRLSQWTHSNSMDSLSGNSSHMEPNLNKHGAISAASNLGPPGKPPH
MDDSYSPYSMMGGSESPTSPLVPPDSWGQGPGKSPKDQITNGTNINWPPEFCPGVPWKGL
QNIDPENDPNMTPGSVPSGPTINTNIQDVNRYLLRDRSGGSSPPSPPQNGALPPSTDWPV
SGCYTSSFSLSSPDEESAGKLSDMKSTWSPGPISHPSQASLSHELWKVPQGPRNNTAPSR
PPPGLTNPAKPSSTWGGNSLGLAQGWSSSYTSEGTTWSTDSSNRTSSWLVLRNLTPQIDG
STLRTLCMQHGPLITFHLFLTQGNAVVRYSSKEEAAKAQKSLHMCVLGNTTILAEFAGEE
EVNRYFAQGQQQLPPTTSWQPNPGTNQMRMGGGVGSQQHAIGHHWSSAGGGLGGGAKTGG
GGDLLWGGVPQYSSLWGPPSGDDSRGVIGSPNPINTLLPGDLLSGESM
NT seq
6087 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaataaaaagcaagacaagaccaagaaggaagctgctcagaaacaggctgct
gacctgaaaaccaaagagccagctaagcccagccccggtcccctccactaccccaccacc
tgtgtgaccctgccccaggcctcacacccccctcctcgtcctcttcagtcagaaccaatg
ggaagcgcgccccctaccacccagcaaacaccacagcagcagaccccacctcagcctccg
tcgtcgtcctcaggcccccgctacccgccccgtgaggtgcccccgcgtttccgccagcag
gagcacaagcagctactgaagaggggccagccactgccagccggagccctgagtagcctc
acagtgacccctgcctccgacccgctcacccctggtgcccccgcttcttcttcctccaca
ggcaagcgccacacagacctgcccttccagagtggtcctggtgcccagtatgagaatccc
cactggggagccttaccaccagccactgaccgcagcagcagcaccaccagtagtagctgg
gatcaagtgatcattgacgggagcgacaccgaggcctggccctccatcagtcgcagcagc
gacagccgaccagcgaatccttcagaatgtgccacagccgctgactgtacgaacccagag
accagcagcaacatgagcatagccgcgggggctactagccagcaggcccactacccctct
ctcaaagctaacgccactaacatgatgcagcctggcggtggccagggagttggagccatc
ggcagcaggggctggggctccggatcaggccccatcaccatgggccccactgagggagcc
aaacccgatggcctagggcccaacatgggtcggagtggaggagcacccggctggaactcc
caacccagttttagcctgaacctgaaccccaacgccaacccctcggcctggcccgtgctg
gggcaagagggggctggaggtggccccaaccccgcctcactacctcccaacggcagcctg
ggcaacagtagcctgggaggggaagagaacaacagcagcagcacctggggaggcatgatg
agccctgacgccccgtcctccaataagaatgtgtctttcagcagcatggaacatcccaac
cttaacactgacggacaaaacagccaccacactaagcagccactcagccccatccacggc
ctgcccggctggggaggccagtcccctaccgagtcctcccagctcaacggagacgcaggg
agctccgtctggggcaacggagacaccaagacttccgctgactccaaaaactcaggctgg
gactcggcaccctccggaggcatgtccggctggggccactctggcagcgggagtggaggt
ggagaaggaggctgggggaagccctccagcggtggaggagaggccaaacgaggctgggat
tcctcagatggcccagcccaggaccagcagttaagctcctggggccagccaaccccggcc
ccgactagtgagggtagcggaagcggcggcagcgaggtgcgctcccaccgcagggacagg
accggtagcgaggacggaggcccccctcccctgcctcggcaggacctggacccccgggtg
ctctgcaacacaggctggggccagacgcccgtccgccagcacacctcctgggagatggag
gagcagcgcgccgccaacgagaggaagaccagcgagatgaggggaggtgctggaggggac
acttggaagggctccagcagcccctcttccggatccccactggacccccggaacggggga
gccaaccccaacctgggaccatctcagaggccaggctcagggggctccggaggcaagagc
gagggcccctcaggctggggaggccctccaccctcaggctggggggagcagcctgtcaac
aaggcccccaacggttcagtcagtggttggggggagcccatggcccaaggccacaacacc
acaaacaatggccccaagagtggagttcaatcctggggcgtccctgaggggaagtcctcc
cctacctgggacgacgggccaaccaagacccagcagagccagtcccagagctggggagag
ggtcccaagtcctcccacggctggggctccggccacggaagtggcagccgtggatccaat
ggctccaacggctccaatggaggagagtggagagaaccggccgaggtgaagaagaatgga
tcctccagccacatgtgggaaggagaaggaggaaatggacgaggaggagggtggaaggac
agccccagaggaggtggaggaaatgggggcggctgggcgtcaaagcctgcccctgctgtt
ggaggtggtggctgggtggagacccagcatcccaacagcccagcaccaggatggggctcc
aagccccaggaaagccccaacggcccagcaccaggatggtgctccaagccccaggaaagc
cccaacaacccggcaccaggatggggctccaagccccaggaaagccccaacggcccagca
caaggatggggctccaagccccaggaaagccccaacggcccagcacaaggatggggctcc
aagcccctggaaagcaccaacggcccagcaccaggatggggctccaagccccaggaaagc
cccaacggcccagcaccaggatggggctccaagccccaggaaagccccaacggcccagca
ccaggatggggctccaagccccaggaaagccccaacggaaatagtggaggtgttggaaca
ggaggaggcagcatggggtcctggggaggccctgcatctgtaaggcagagttccaacccc
ggctggggcccagggagctccggagccaaacccgacccagcgatggagcccaccggctgg
gaggaaccctctcctccctccatccgccgcaagatggagatcgatgacggcacgtccaca
tggggagaccccagcgcctacaataagaccgtgaatatgtgggaccgcaacaaccccact
ggaggtaacggtaaccaaggcaacgcccccacccagccgccgaccagcaagagcaatgga
agcatggccgtcaacaacagccacaaccactcctccgtcccccctagcaataacaatcac
caccacatgaaccaccaccacccgcaccacggacagcccccgccacacagccagcaccac
ggcaacaacaatggatcccccaacaccgccgccccgcaccagggcagtggaccccagggc
agaccacctatggccaacccaggctggggggagctgcccagtgtccagcagcccaaacca
gaaatggcatggggggaacccgctggcccctctcctgcagtggacaacggcacctctgcc
tggggcaaaccccccggtgttcctggaggctggggcgatggggggcacgagcccaatgga
ccctacaggaggggcaacaacggaccctctggacctgcaccctgcaagccagcccccaaa
tctatgcaagacggctggggaggcgggagggaggaggagatgggcatgtcttctggccaa
tgggatactgacgccggagacatgtggaacagccccgcctcccaggagagcagcacctcc
tgtaactcgtggggccagccgcccaagaagggcccgcccaagggcaagatgggcaaccag
ccagacgaagcctggatcatgaaccgtctcatcaagcagctcacggacatgggcttcccg
agggatcctgccgaggaggctctgaagagcaatgacatgaacctggaccaggccatgagc
gctttgttggagaagaagactgaactggacaagcggggcatgggcatgtcagactacaac
aacgggatgaacaagccgttgggttgccgtccccaggccctctccaaagacccctcctcg
gaccgcagcccattcctagacaaggacggtggtctgtcagatgacacccccccctcaccg
tttctgccttctcccgtcagcctgaagctccccctgattaacaaccttcagcctgggctg
gccctgggctccccagggctcaacatgcagaacttgaacaacagacagatgcagagtgga
atgttgggcagtagtggagcagcactatcccgggccatgcagcagccgcctcctcagccg
tcagtgccgcctctcggctcctcccagcctaatctacgcgctcaagtgcctcagtttctc
acccctcaggttcaagcacagctcttgcagtttgccgcaaaaaacattggtctgaaccct
gcacttttaacctcaccaataaaccctcaacaaatgactctgttgtaccaacttcagcaa
ctgcaaatggcgtaccagcgtttacaaatccagcagcagatgatgcaagctcagcgcaac
gtctcgggccccatcagacaacaagagcagcaagttgcacgtacaatcaataacatgcag
cagcagatccaacagcaccagcgtcagctgtaccaggccctgctgatgaagcagcagccc
ccggctcccactccgngcctgcaccccagccaaggcaaatcagccctggactcgttccca
ggccacccccaggcaccgggcctctccgacctgcacaccaaagagccgcagtcttctccc
aactcctacagcccctaccccctctctggactcaatccaaacatgaatgtaaactgcatg
gaggtggggggcctgtccatgaaggagcctccccagccccagtcccgtctgtcccagtgg
acccactccaactccatggacagcctctctggaaactcctcccacatggagcccaacctc
aataagcacggtgccatatctgctgcttctaacctgggcccccccggaaagcccccccac
atggatgactcctacagcccatacagtatgatgggtgggtctgagtctcccacctccccc
ctggttccccctgacagctggggccagggaccaggaaagagccccaaggatcagatcacc
aatggaacgaatatcaactggcccccagagttctgtccaggcgtgccctggaagggcctg
cagaacattgaccccgagaacgaccccaacatgaccccaggaagcgttcccagcggcccc
accatcaacaccaacatccaggacgtcaaccgctacctgctccgggaccgcagcggaggc
tcctcccctccttcaccgcctcagaacggtgctctgcccccctccacggactggccagtc
agtggctgctacactagctctttcagtctgtcctccccggatgaggagagtgcaggtaag
ctatctgacatgaagtccacctggtccccgggtcccatctcccacccctcccaggcctct
ctatcccacgagctgtggaaggtcccccagggaccccgtaacaacacagccccttcaagg
ccacctcccggccttaccaacccagccaagccctcctccacctgggggggaaactccctg
ggcctggcccaaggctggagcagctcgtacacctcagagggcaccacctggagcacagac
agctccaacaggaccagtagctggctggtactgaggaacctcaccccccagatagatggc
tccaccctgcggacgctgtgcatgcagcacggccccctcatcacattccacctcttcctg
acccagggaaacgctgtggtgcgatacagctccaaggaggaggctgccaaggcccagaag
tccctgcacatgtgtgtgctggggaacaccaccatcctggcagagtttgctggggaggag
gaggtgaaccgctactttgcacaaggccagcagcagctcccgcccaccaccagctggcag
cccaaccccggcaccaatcagatgcgcatgggaggaggcgtaggttcgcagcagcacgct
attggccatcactggagcagtgccggtggaggcctggggggaggagccaagacgggcgga
ggcggagacctcctgtgggggggcgtgccccagtactccagcctgtgggggccccctagt
ggcgatgacagtcgcggcgtcatcgggagccccaaccccattaacacgctgttgccaggt
gacctgctgagtggagagtccatgtag
DBGET
integrated database retrieval system
