Oncorhynchus tshawytscha (Chinook salmon): 112230329
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Entry
112230329 CDS
T05605
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112230329
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
otw03041
]
112230329
03009 Ribosome biogenesis [BR:
otw03009
]
112230329
Enzymes [BR:
otw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112230329
Spliceosome [BR:
otw03041
]
Complex A
U1 snRNP components
U1 related factors
112230329
Complex B
112230329
Ribosome biogenesis [BR:
otw03009
]
Eukaryotic type
Pre-60S particles
Helicases
112230329
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
112230329
NCBI-ProteinID:
XP_024252336
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All DBs
Position
LG32:8668141..8675646
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AA seq
633 aa
AA seq
DB search
MPGFSDRDRGRDRGYGGAPRFGGGGGGSRGGPPQGKFGNPGERLRKKHWNMDELPKFEKN
FYQEHPDVTRRPPQEVENYLRSKEVTVKGRDCPKPMMKFHEANFPNYVMDVIAKQGWAEP
TPIQAQGWPLALSGKDMVGIAQTGSGKTLAYLLPAIVHIQHQPFLEHGDGPICLVLAPTR
ELAQQVQQVAAEYGRASRLKSVCVYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKT
NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKQY
VQINVGALQLSANHNILQIVDVCNDGEKDDKLLRLLEEIMSEKENKTIIFTETKRRCDEL
TRRMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFVINYD
YPNSSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQASDLIAVLREANQAINPKLLQMAEA
RGGRGGGGRGGFRDDRRDRYSGGRSYGGGGGGGGGSYRDKDSDRGFGGGPKSAFGAKTQN
GGGYGGSTYNKGTSSGGSYGNSYSSNGQASFGATNQVGAFGGQNFQAPPQFGAAQAATQN
GMGRPPFPFNPQAQQPQQPPPMVPYSMPPPFPQ
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgcccggattttccgacagagatcgtggcagagacagggggtatggaggtgcacctcgt
tttggaggcggcggtggtggcagtaggggtggaccaccacaggggaaatttggcaaccca
ggtgaaagactgcgtaaaaaacactggaacatggatgagctcccaaagtttgagaagaac
ttctaccaggagcacccggatgtgacccgcagaccacctcaagaggtggagaactacctg
agaagtaaagaagtaacagtgaaaggcagagactgccccaagccaatgatgaagtttcat
gaggccaattttccaaattatgtgatggatgtgattgccaaacaaggatgggctgagcca
actcctatccaggctcagggctggcctctggccctcagtgggaaagacatggtgggcatc
gcccagacaggctctggtaaaacccttgcttatctgctgcctgcaatcgtgcacattcaa
caccagccattcttggagcatggagacggacctatatgtttggtactggccccgacccgt
gagctggcccagcaggtgcagcaggttgccgctgagtacggcagggcctcccgtctgaag
tcagtctgcgtctatggtggagcccccaaaggaccccagattcgggaccttgaacgaggt
gttgagatctgtattgccaccccagggcgtctcattgacttcctggaggctgggaagacc
aaccttcgcaggtgtacctaccttgtgctggatgaggctgaccgtatgctggacatgggc
ttcgagccccaaatccgcaaaattgtggaccaaattagaccggatcgtcagaccctcatg
tggagtgccacctggcccaaggaggtgcgtcagctggctgaggacttcctaaagcagtat
gtccagatcaacgtgggtgctctgcagctcagcgccaatcacaacatcctgcagatagtg
gacgtgtgcaacgacggagagaaggatgacaaactcctccggctgctggaagagatcatg
agcgagaaggagaacaagaccatcatatttactgagaccaagagacgctgcgatgagctc
accaggaggatgagacgagatggctggccagcaatgggtatccacggagacaagagccag
caggagagggactgggttctcaatgagttcaaatacggcaaggcccccatcctcatcgcc
accgacgtggcctcccgcggtctagatgtggaggatgtgaaatttgtcataaattatgac
tatcctaactcctctgaggactatatccaccgcattggacgcacggcccgcagtcaaaaa
acgggcactgcctacaccttcttcacccccaacaacatgaaacaggccagtgacctcata
gctgtgctccgcgaagctaaccaggctatcaaccccaagcttctccagatggcggaggcc
agaggaggtcgtggaggggggggaagaggtggctttagggatgaccgacgagataggtat
tctggggggaggagttacggtggtggtggtggtggtggtggtggtagttacagggacaag
gatagtgacagggggttcggtgggggaccaaagagtgcctttggcgcaaaaacccaaaac
ggagggggctacgggggtagcacctataacaagggcactagctctggcggtagctatggc
aacagctacagcagcaacggacaggctagcttcggcgccaccaatcaggtgggtgcgttc
ggtggccagaacttccaggcccctccacagtttggagcggcacaggcggccacccaaaac
ggcatgggtcgcccgccgtttccttttaacccacaggcgcagcagccccaacaaccccca
cccatggtaccctactctatgcctcctcctttcccacagtaa
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