Oncorhynchus tshawytscha (Chinook salmon): 112230371
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Entry
112230371 CDS
T05605
Name
(RefSeq) vacuolar protein sorting-associated protein 54 isoform X1
KO
K17600
vacuolar protein sorting-associated protein 54
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
otw01009
]
112230371
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112230371
Protein phosphatases and associated proteins [BR:
otw01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
112230371
Membrane trafficking [BR:
otw04131
]
Endosome - Golgi transport
Tethering complex
GARP complex
112230371
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54
Vps54_N
SU10_portal
SBP_bac_6
Motif
Other DBs
NCBI-GeneID:
112230371
NCBI-ProteinID:
XP_024252406
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Position
LG32:6827216..6845019
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AA seq
1005 aa
AA seq
DB search
MASHSSSPVPHPSSGGSEGIFRKDRDPSSRHYRPIHSLPDVCPKEPTGEAARGLCEGPSV
VADQHRWTVYNSKVNLPAALNDPRLAKRESDFFTKSWGLDFAETEVMPSFYLPNITKEHF
GPYLQETAQREKIHERCKNICPNKDELDAVSSITNNHDKSRTELEQVPKIFMKPDFALDD
PTTFNAVLPWSHFNSAGRKSSRDMASSRLLQEKLSHYLDVVEVSIARQISLRSEAFFHAM
SSQHELQDRLTETARAVTVLRGRTAAIERIMCEGPLRALRQALTRSNCARLHNKLKLMAA
VHQSQPTVQLLLSTSEFVGALELIATTKEVLQQELQGIHSFRHLGSQLCEMEKLIDKMMV
EDFSMYSRSDLSRSLEDDGQVMEKWSLFSQMQYKRSVSIKDRLESLVFGLLRQRKLDFLD
IYSDEMILAAKSIVTQSVVDSVSQIEEIDTDIVTKLADQMRLMTFPQWFELLKSVFENFI
LFLKRIKATLSVVRNVVLEALDSNQKSRLLERAAAAAGGLAEAPGTPLNQGEAELAYLTH
EGLFISDALNDAQLNLGAGGGQEQSSTVGPRQALSRLDGCGSDSASGTTESSSSREHALQ
PGVATGISSSEDMMPSDLELGRVANNIQELLYTASDVSHDRCVKVLMARAKDGSLERLSS
AEFVFLSQAVEGFVRDTEELCCRRSVSLRGALQSQANRFVHRFHEERKTKLSLLLDNERW
KQAEVPAEFQDLVNSIADGRITLPERKPQGTEERKPSDYLHIDGQKYAVVGTVLLLIRIF
LEYCQCVNDIPSISTDMLTRLSDLLKHFNSRSCQLVLGAGALQVVGLKTITTKNLALASR
CLQLVVHYIPVIRAHFETKLTPKQYSVLRHFDHITKDYNDHIAEISAKLVSIMDSMFEKV
LSKYEVKAPMPSACFRNVCKQMAKMHEALYELLPEEQAQMLFLRINASLKIHLKRQLARL
GVHHDGGPQHGLVTVDVAFYTENVQSLRTLEKLDLNMAEIWEQKR
NT seq
3018 nt
NT seq
+upstream
nt +downstream
nt
atggcctcccacagctcctccccagtgcctcatcccagcagtggtggcagcgaggggatc
ttccggaaggacagggacccttcctcacgacactacaggcccatccactccctgcccgac
gtctgccccaaggagcccacgggtgaggcagcccgggggctgtgcgagggcccgtcggtg
gtggcagaccagcacaggtggacggtgtacaactccaaggtgaaccttccagccgcgctg
aacgacccacggctggccaagagggagtctgacttcttcaccaaatcctggggcctggac
tttgccgagacggaagtcatgccctccttctacctccccaacatcacaaaggaacacttt
ggcccctacctgcaggaaacagctcagagggagaaaatccatgagcgatgcaagaatatc
tgtcccaacaaggatgagctggatgcggtctccagcatcacaaacaaccacgacaaatca
agaacagagttggagcaggttcccaagatcttcatgaagcctgactttgcactagacgac
ccaacgacctttaacgcggtcctaccatggtcccacttcaacagcgctgggcggaagagc
agcagggacatggcatcgtcacggttactacaggaaaagctgagccactacctcgacgtg
gtggaggtgagcatcgcgcgccagatctccctgcgctccgaggccttcttccacgccatg
tcctcccagcacgagctccaggaccgcctcaccgaaaccgcccgcgccgtgacagtcctc
cggggccgcacggccgccatcgaacgcatcatgtgcgaaggcccgctgcgggcactgcgg
caggcgctgacgcgctccaactgcgcgcggctacacaacaagctgaagctgatggcggcg
gtgcatcagagccagcccactgtgcagctgctgctctccacctcggagttcgttggggcc
ctggagctcatcgccaccaccaaggaggtgctgcagcaggagctgcaggggatacacagc
ttcagacacctgggctcgcagctgtgtgagatggagaagctgatagacaagatgatggtg
gaggactttagcatgtactccaggagtgacctcagcaggagtctggaggatgacggacag
gtcatggagaagtggtcactgttctcacagatgcaatacaaacgttcagtctcaataaag
gacaggctggagtctctggtgtttggcttgctcaggcagcggaagctagattttctggac
atctacagcgacgagatgatcctagcagccaaaagcatcgtcacgcagtctgttgtcgac
tcggtgtcacagattgaagaaatcgacactgacatcgtcacaaagctggcagaccagatg
cgtctaatgaccttcccccagtggtttgagctgctgaagtccgtctttgagaacttcatt
ctcttcctgaagaggatcaaggcaacgctcagtgtggtgaggaatgtggtgctggaggcg
ctggacagcaaccagaagagccgtctgctggagcgggctgcggctgcagcggggggcctt
gctgaggccccaggaacccctctcaatcagggggaagcagaactggcctacctcacccac
gagggcctgttcatcagcgacgctctaaatgatgcccagctgaacctgggggcaggcggg
ggccaggagcagagctccacggtggggcccaggcaggccctgtcacgtttggatggttgt
ggtagtgactccgcctcagggaccaccgagtcgtcctccagcagggaacacgctctccag
ccaggagtagccaccggcatctcgtccagtgaggacatgatgcccagtgacctggagctg
ggccgcgtggccaataacatccaggagctgctctacaccgcctcagacgtcagccacgac
cgctgtgtcaaagtcctcatggccagagccaaggatggctccctggagcgtctgagctcg
gccgagtttgtgtttctgtcccaggcggtggaaggctttgtgagggacactgaggagctg
tgctgcaggcgcagtgtgtccctaaggggggcgctacagagccaggccaaccgctttgtc
caccgcttccacgaggagcgcaagaccaagctcagtctgctgctggacaatgagcggtgg
aaacaggcagaggtccctgcagaattccaggacctggttaactccatagcagatggcagg
atcacactacccgaacgcaaaccccaaggcacagaagaaaggaaaccaagtgattatttg
cacattgatggccagaaatatgctgttgtcggcacggtgttactactaatccggatcttc
ctggagtactgtcagtgtgtcaacgacatcccttccatctccacagacatgctcacccgc
ctctcagacctactcaagcacttcaactcgcggagctgccagctggtcctgggggcagga
gcactacaagtggtgggactcaagaccatcaccactaaaaacctggccctggcctctcgc
tgtcttcagctggtggttcactacattcccgtcatcagggcccactttgagaccaagctg
acgcccaagcagtacagcgtcctcaggcactttgaccacatcacgaaggactacaacgat
cacatagcggagatctccgctaaactggtgtcgatcatggacagcatgtttgagaaggtg
ctgtctaagtatgaagtcaaggcccccatgccgtcggcctgctttcgcaacgtctgtaaa
caaatggccaaaatgcatgaagccctctacgagctgctacctgaggaacaggcacagatg
ttgttcctgaggatcaatgccagccttaaaattcaccttaaaaggcagctggcccgtctc
ggggtgcaccacgacggtggacctcaacatgggctggtgacggtggatgtcgcgttttac
actgagaatgttcaatcactgaggacacttgagaagctagacttgaacatggctgagatc
tgggagcagaagaggtga
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