Oncorhynchus tshawytscha (Chinook salmon): 112230416
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Entry
112230416 CDS
T05605
Name
(RefSeq) eukaryotic initiation factor 4A-III
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03013
Nucleocytoplasmic transport
otw03015
mRNA surveillance pathway
otw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112230416
09122 Translation
03013 Nucleocytoplasmic transport
112230416
03015 mRNA surveillance pathway
112230416
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112230416
03041 Spliceosome [BR:
otw03041
]
112230416
03009 Ribosome biogenesis [BR:
otw03009
]
112230416
03012 Translation factors [BR:
otw03012
]
112230416
Enzymes [BR:
otw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112230416
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
112230416
mRNA cycle factors
Stress granule specific factors
112230416
Spliceosome [BR:
otw03041
]
Complex C
Other components
EJC/TREX
112230416
Ribosome biogenesis [BR:
otw03009
]
Eukaryotic type
90S particles
Helicases
112230416
Translation factors [BR:
otw03012
]
Eukaryotic type
Initiation factors
eIF-4
112230416
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Cas3-like_C_2
AAA_30
Flavi_DEAD
TniB
Motif
Other DBs
NCBI-GeneID:
112230416
NCBI-ProteinID:
XP_024252479
LinkDB
All DBs
Position
LG32:complement(5140516..5152542)
Genome browser
AA seq
406 aa
AA seq
DB search
MEVATVPRTRRLLKEEDMTKIEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQ
QRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKV
LLALGDYMNVQCHSCIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLV
LDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTNKFMTDPIRILVKRDE
LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVS
SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI
GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atggaagtagccaccgtaccgcgcacgaggcgtctgttgaaggaggaagacatgaccaag
atcgagtttgagaccagcgaggaggtcgatgttactcctactttcgacacgatgggccta
cgagaggatctcctccgtgggatatacgcatacggattcgagaagccttccgcaatccaa
caaagagcaattaaacagatcatcaagggtagagatgtcattgcacagtctcagtcagga
acaggaaagactgccacgttttgcgtatcagtgctgcagtgtcttgacattcaggtgcgt
gaaacccaagcactgatcctggctcccaccagagagttagctggacagatacagaaggtg
ctcctggccctaggtgactacatgaacgtccagtgtcattcctgcatcggagggacaaac
gtgggtgaggacatccgcaaactggactatggccagcacgtggtagcagggacccctggg
agagtgtttgatatgatccgcaggaggagtttgaggacgcgtgccatcaagatgctggtg
ctggacgaagcagacgaaatgctcaacaagggattcaaagagcagatctacgacgtgtac
cggtacctgccccccgccacccaggtctgtctgatcagcgccacgctgccccatgagatc
ctggagatgaccaacaagttcatgaccgaccccatccgcatcctggtcaaacgtgatgag
ttgactctagagggcatcaagcagttcttcgtggcagtagagagggaggagtggaagttt
gacaccctgtgtgacctgtatgacaccctcaccatcacacaggctgtcatcttttgcaac
accaagcggaaggttgactggctgactgagaagatgagggaggccaacttcactgtttcc
tccatgcacggagacatgccccagaaggagagggagtccatcatgaaagagttccggtcc
ggtgccagccgagtgcttatctccactgatgtgtgggcccgaggtctggacgtgccccag
gtgtccctcatcatcaactacgacctgcccaacaacagagagctgtacatccacaggatt
ggccgatcgggtcgttacggccgcaagggtgtggccattaactttgtgaagaatgacgac
atccgtattctccgtgacattgagcagtactattccacgcagatcgatgaaatgccaatg
aacgtggctgacctgatctaa
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integrated database retrieval system
