Oncorhynchus tshawytscha (Chinook salmon): 112230695
Help
Entry
112230695 CDS
T05605
Symbol
supt6h
Name
(RefSeq) transcription elongation factor SPT6
KO
K11292
transcription elongation factor SPT6
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otw03021
]
112230695 (supt6h)
03036 Chromosome and associated proteins [BR:
otw03036
]
112230695 (supt6h)
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
112230695 (supt6h)
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
112230695 (supt6h)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
HTH_44
SPT6_acidic
Tex_central_region
S1
Spt6_S1
S1_RRP5
HHH_9
HHH_3
SH2
Tex_YqgF
Tex_N
Motif
Other DBs
NCBI-GeneID:
112230695
NCBI-ProteinID:
XP_042167652
LinkDB
All DBs
Position
LG33:38712674..38764344
Genome browser
AA seq
1749 aa
AA seq
DB search
MSDFIDSEAEESEEEFEEKDLKPKKTQAFMDDEEEEEELNTEDQDEHGNLMGLIDDDVDE
DEEEEEKKSGGAGSGSDSEDEVRHRRKKRNYDDYLDDDDLDLIEENLGVKVKRRKKKYDR
VKTMDDDEDDEKDQIADEIFHRGDDEDGEGELEEGETVDPPLRRHGERLDEEEEEEGEEE
SDIDDFIVDDDGQPITKRRSKKFSGYTDAALQEAQEIFGGDFDFAEFDADGAYEQGEEEE
EDQDEEGWDRPKKPTKRRVGRKSIFELYEPSELESSHMTDQDNEIRSTDMPERFQLRSIP
VKPAEDDELEEEAEWIYRNAFSTPTISMQESTDYLDRGATTNFSRKGPSTIAKIKEALNF
MRNQHFEVPFIAFYRKEYVEPELNINDLWKVWQWDEKWCQLKSRKQNLTRLFRRMQGYQY
EQISADPDKPLADGIRPLDTADMERLKDVQSIDELSDVYSHFLLYYGRDIPKMQNAAKAA
SKKKKKKKKIEVNEEGEEEEVEEEEEVEEEKGPDLKLASRRDMYSICQSAGLDGLAKKFG
LTPEQFGENLRDSYQRHETEQFPAEPVELAKDYVCSQFNSPEVVLEGTRYMVAMQIAREP
LVRHVLRQTFQERAKINIKPTKKGKKDMDEAHFGYSFKYLKNKPVKELNGDQFLKMCQAE
EEGLLTIDICIDLLGVKGVAGDQTYFDEIKQFYYRDEFSHQVQEWNRQRTLAIERSLTQF
LYPQMAKELKNKLIAEAKENIIKSCCRRLYNWLKVAPYRPDQQAEEEDDDLMDESQGKGI
RVLGVAFADSRDTPVFCSLINGEGEVVDFLRLPYFLKRRNAWKEDERDKKLQDIENLKKF
LTSKKPHVVAVAGENRDAHMIMEDIKRTVSELEQESSLPAVGVELVDNELAMLYMNSTKS
QTEFRDYPPLLRQAVSVARKIQDPLVEYAQVCSSDEDILCLKLHPLQEHVVKEDLLSALY
CEFINRVNEVGVDVNRAISHPYTQSLVQFVCGLGLRKGSHLLKILKQNNTRLENRTQLVT
MCHMGPKVFINCAGFIKIDTASLGDSTDSYIEVLDGSRVHPETYEWARKMAVDALEYDES
AEDANPAGALEEILENPERLKDLDLDAFAEELERQGYGNKGITLYDIRAELSCRYKDLRV
PYRAPNTEEVFNLLTKETPETFYIGKLITSVVTGIAHRRPQGESYDQAIRNDATGLWQCP
FCQQDNFPELSEVWNHFDSGSCPGQAIGVRARMDNGVQGFIPTKFLSDKVVKHPEERVKV
GMTVHCRIMKIDIEKFNVDLTCRTSDLMDKNNEWKLPKDSYYDFDTETEDTKTEEERKKK
QQRTTYIKRVIAHPSFHNINFKQAEKMMESMDQGDVVIRPSSKGENHLTVTWKVADGIYQ
HVDVREEGKENAFSLGHTLWINTEEFEDLDEITARYIQPMAAFARDLLGHKYFQDCNGGD
RKKMEELLIRSKKEKPTFIPYFVSACKDLPGKFILGYQPRGKPRVEYVTISPDGFRYRSQ
MFPTVNGLFRWFKDHFQEPVPGITPSSSSRTRTPASVNATPANINIADLTRAVSALPRNM
TSQMFSAIAAVTGQGQGQNANTTPAQWNSSQYGYTGGSSGGGGGSSSAYHVFATPQQPMA
TPMMTPSYSYTTPSQQTMGTPQYPSTPQSSHSHGHTQSNQGHSSHQGPSSNTPSSSSRGR
TPQQQPKSSGSTAVDWGKVAEQWLQEKEAERKKQKTPRMTPRPSPSPMIQSTPMSIAGDA
TPLLDEMDR
NT seq
5250 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacttcatcgatagcgaggctgaggagtcggaggaggagtttgaagagaaagac
ctgaagcctaaaaagacccaggcgtttatggatgatgaggaagaggaggaagagttaaac
acagaggaccaggatgagcacgggaacctgatggggctcatcgacgatgatgtggatgaa
gatgaggaagaggaagagaagaaaagtggaggagcaggcagcggcagcgactcagaggat
gaagtcagacaccgacgcaagaaacgcaactatgatgactacctggatgatgatgatctg
gacctcattgaggagaacttgggagtcaaagtcaagaggaggaagaagaagtatgaccgt
gtgaagactatggatgatgatgaagatgacgagaaggaccagatcgcagacgagatcttc
cacagaggagatgacgaggacggagagggggagctggaggagggagagacagtcgacccg
cccctacgtcgccatggtgaacgcctcgacgaagaagaggaagaggagggagaggaggag
tcggatattgatgactttatcgtggacgacgatggccagcctatcaccaagaggagaagc
aagaagttctcaggatacacagatgcagccctccaggaagctcaggagatcttcgggggc
gactttgactttgcggagttcgacgccgacggtgcttatgaacagggtgaggaagaggag
gaggaccaggatgaagagggctgggaccggcccaagaagccaacaaagaggagggtgggg
aggaagagcatcttcgagctctacgagcccagcgagctggagagtagtcacatgactgac
caggataacgagatccgctccacagacatgccagagaggttccagctgcgctccatccca
gtgaagcctgctgaggatgatgagttggaggaagaggcagagtggatctacagaaacgct
ttctcaacccccaccatctccatgcaggagagtacagattacctggaccgaggagccact
actaactttagcaggaagggccccagcaccatcgccaagattaaggaggccctcaacttc
atgaggaatcagcattttgaggttccattcatcgcgttctacaggaaggagtacgtagaa
ccggagctcaacatcaacgacctgtggaaggtctggcagtgggacgagaagtggtgccag
ctgaagagcaggaagcagaacctgacacgtctgttccggaggatgcaggggtaccagtat
gagcagatctctgccgaccccgacaagcccctggctgacggtatcaggcccctggacact
gctgatatggagagactgaaagatgtccagtccatagatgagctgagtgacgtgtatagt
cacttccttctgtactatggccgagacatccccaagatgcagaacgcagccaaagctgcc
agcaagaagaagaagaagaagaagaagatcgaggtcaacgaggaaggtgaggaggaagag
gtggaggaagaggaggaggtggaggaagagaaggggccggacctgaagctggcatctcgt
agagacatgtacagcatctgtcagagcgctgggctcgatggcctggctaagaagtttggt
ctgactccagagcagtttggagagaatctgagagacagctaccagcgtcacgagacagag
cagttccctgccgagcctgtagagttggctaaagactacgtctgcagccagtttaacagc
cctgaggtggtgttggaggggacccgttatatggttgcgatgcagattgccagggagcct
ctggtcagacacgtcctcagacagacgttccaggagagagccaagatcaacatcaagccc
accaagaagggaaagaaggacatggacgaggcccactttggctactccttcaagtacctg
aagaacaagccagtgaaggaactgaacggagaccagttcttaaagatgtgccaggctgag
gaggaggggcttctcaccatagacatctgcatcgacctcctaggggtcaaaggggttgca
ggtgaccagacatactttgatgagatcaagcagttttactacagagatgagttcagtcac
caggtgcaggagtggaacagacagaggaccctggccatcgaacgctccctcacacagttc
ctctaccctcagatggccaaggaactcaagaacaaactcatcgcggaggccaaggaaaac
atcatcaagtcgtgttgcaggaggctgtataactggctgaaggtggctccttacagacca
gaccagcaggcggaggaggaggatgatgatctgatggatgagagtcaaggaaaaggcatc
agagtcctgggagtggcctttgcagacagcagagacacgccagtgttctgttcactgatc
aacggagagggagaggtcgtggacttcctccgtctgccctacttcctgaagaggaggaac
gcatggaaggaggacgagagagacaaaaagctccaggacattgagaacctgaagaagttc
ctgaccagtaagaagcctcacgtggtggctgttgccggggagaatagggacgcccacatg
ataatggaggacattaagaggacagtgagtgagttggagcaggagtcttctctgcctgct
gtgggagtggagctggtagacaacgaactggccatgctctatatgaacagtactaaatct
cagactgagttccgtgactaccctcccctgctgcgccaggctgtgtcagtagccaggaag
attcaggatcctctagtggagtacgctcaggtctgcagctcagacgaagacatcctctgc
ctcaaactacaccctctacaggagcatgtagttaaggaggacctgctgagtgctctgtac
tgtgagtttataaaccgggtcaacgaggtgggggtggatgtgaacagagccatctctcac
ccctacacacagagcctggttcagtttgtctgtggcctcggactcaggaagggatcccac
ctgctcaagatcctgaagcagaacaacactcgtctggagaacaggactcagctggtcact
atgtgtcacatgggccccaaggtcttcatcaactgtgccggcttcatcaagatagacacc
gcctctctcggagacagtactgactcatacatcgaggttctggatgggtcccgggtgcac
ccggagacatatgagtgggccagaaagatggcggtggacgctctggaatacgacgagtca
gcggaggacgccaacccggccggagcgctggaggaaatcctggaaaacccggagcgcctc
aaagacctggacctggatgcttttgctgaggagctggagagacagggttatggtaacaag
ggcatcaccctgtatgatatccgtgctgagttgagctgcaggtataaggacttgagagtt
ccctacagagctcctaacaccgaggaggtgtttaacctgctcaccaaggagacaccagag
accttctatataggtaagctgatcaccagtgttgtgaccggtatagctcaccggcgcccc
cagggggagagttatgaccaggccattaggaacgacgctacagggctgtggcagtgcccc
ttctgtcaacaggacaacttccctgaactcagcgaggtgtggaaccattttgacagtggt
tcgtgtcctggccaggctataggtgtgagggctcggatggacaacggtgtccagggcttc
atccccaccaagttcctcagtgacaaggtggtcaaacaccctgaggagagggtgaaggtg
ggtatgacggtacactgtcgcatcatgaagattgacattgagaagttcaacgtggacctg
acatgtcgtacgtctgacctgatggataaaaacaacgagtggaagctccctaaagacagt
tactacgacttcgacacggagacagaggacaccaagacagaggaggaacgcaagaagaaa
cagcagagaaccacctatataaaacgtgtgattgcacacccatccttccacaacatcaac
ttcaagcaggctgagaagatgatggagtccatggaccagggagatgttgttatcaggccc
agcagcaagggagagaaccaccttactgtcacctggaaggtagctgacggcatctaccag
catgttgatgtgagagaggagggcaaggagaacgccttcagcctgggacacacactctgg
atcaacactgaggagtttgaggatcttgatgagatcacagctcgttatattcagccaatg
gcagcgttcgctcgtgacctgctgggacacaagtacttccaggactgtaatggaggggac
aggaagaaaatggaggagttgttgatcaggtctaagaaggagaagcctacgttcataccc
tactttgtctcagcctgtaaagacctgccagggaagttcatactgggataccagccacgt
ggcaaaccacgtgttgagtatgtgaccatctctcctgacggcttccggtaccgctcccag
atgttccccactgttaacggactgttccgctggttcaaagaccacttccaggaaccggta
ccaggcatcacccccagcagtagcagtcgaacacggacacctgcctctgtcaacgctaca
ccagctaacatcaacatcgcagacctgacacgagcggtcagcgctctcccacgcaacatg
acctctcagatgttcagtgccatcgccgcggtgacggggcaggggcagggccagaacgct
aacactacgcctgcccagtggaactccagccaatacggttacaccgggggcagcagtggg
ggcgggggaggcagctcctcagcctatcacgtgtttgctacgccccaacagccgatggcg
acacccatgatgacccccagctactcatacaccacccccagccagcagaccatgggtacc
ccgcagtacccctccaccccccagtcctcccactcccatggacacacacagagcaaccag
ggccacagcagccaccagggaccctcgtccaacactccctcgtcctcctccagaggacgc
actccgcagcagcagcctaagtcgagcggcagcacggcggtggactggggcaaggtagcg
gagcagtggctccaggagaaggaggcggagaggaagaagcagaagacccccaggatgacc
ccgcgaccttcccccagccccatgatccagagcacccctatgtcaatcgctggagacgcc
acgccccttctggacgagatggaccgatag
DBGET
integrated database retrieval system
