Oncorhynchus tshawytscha (Chinook salmon): 112230717
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Entry
112230717 CDS
T05605
Symbol
exosc8
Name
(RefSeq) exosome complex component RRP43
KO
K12586
exosome complex component RRP43
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112230717 (exosc8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112230717 (exosc8)
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
112230717 (exosc8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
112230717
NCBI-ProteinID:
XP_042167442
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All DBs
Position
LG33:42283130..42300059
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AA seq
277 aa
AA seq
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MAAGFKTAEPLEYHRSFLKENCRPDGRELGEFRTTTLNIGSISTADGSALVKIGNTTVMC
GIKGELTSPAVDAPNKGYIVPNVDLPPLCSSRFRPGPPGEQAQAASQFIADVIESSAVVQ
KEDLCIVKGKLCWVLYCDIMCLDYDGNLLDACLIALLAALKNARLPEVTVNKETEVPEVT
LENRRGLNIHKHPVGASFIVFDDSIMIVDPTAEEESLSTATITVVTDEEERLCALHKPGG
TSLSGEKLQDCISRATTRHREVRKLIDKVTQSDKTPK
NT seq
834 nt
NT seq
+upstream
nt +downstream
nt
atggcggctggattcaaaactgccgagcccttggaatatcaccggagttttctgaaagag
aactgccgtcctgatggaagggagctgggtgaattcagaaccactacattgaatataggg
tctatatccacagcagacggctcagccctggtgaagattggaaacaccacagtcatgtgt
ggcatcaaaggggaactgacaagcccagcagtggatgcgcctaataaaggctacattgta
cccaatgtagacctgcctcctctgtgttcgtctcggttccgtcctggacctccaggagaa
caggctcaggccgccagccagttcatcgctgatgtcatagagagctctgccgtcgtccag
aaagaggacttgtgcattgtgaaaggaaagctgtgttgggtcctgtactgtgacatcatg
tgtctggactatgacggcaacttgttggacgcctgtctcatcgccctgctggctgctctt
aagaacgcacgtctcccagaggtgacagtcaacaaagagaccgaggttcctgaggtgacc
ctggagaacaggagaggtctgaacatccacaaacaccctgtaggggcctctttcattgtg
tttgatgactctataatgattgtcgaccccaccgctgaggaagagagcctgtctacagcc
acaatcacagtggtaacagatgaggaagagcgactctgtgccctccacaagccaggtggt
acgtcattatcaggtgagaagcttcaggattgtatcagccgagccacgacgagacacagg
gaggtccgcaaactcatcgacaaagtcacacagagcgacaagacaccaaaataa
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