Oncorhynchus tshawytscha (Chinook salmon): 112230721
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Entry
112230721 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin-16
KO
K16507
protocadherin-16/23
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
otw04515
]
112230721
Cell adhesion molecules [BR:
otw04515
]
Cadherins
Cadherin related
112230721
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Fibulin_C
Cadherin_pro
TMEM154
CADH_Y-type_LIR
LapA_dom
Motif
Other DBs
NCBI-GeneID:
112230721
NCBI-ProteinID:
XP_042167126
LinkDB
All DBs
Position
LG33:46257344..46537985
Genome browser
AA seq
3311 aa
AA seq
DB search
MTITCEGGPRASSLCVCSGLWRPRSLLLLYTVLELVMVHSTPVLGALELQLDEEQPAGTI
VGDISAGLPPGITASLYFISDHEGTGVGSDLNIDETSGIITTARRLDREQRDHYSFIAVT
MTGVTVEVSVTVNDINDHAPAFLKPKALLKIPEQTAVGTRVSLEPASDADRDQLTTQGYV
IKEGNVGQAFRLETKRAANKVLYLDLVVNGVLDREKRSSYSLVLEAFDGGSPRRTGLMTL
EVFVTDINDHAPVFNQSRYHAIISESLPQGSNILQVFASDADEGDNGLVLYEINRRQSDP
DRYFVMDTRSGVITLNRPLDYELKRVHELVVQARDNASHPEVTNAFVTIHVRDYNDNQPT
MTIIFLSEDGSPRISEGAQPGQYVARISVTDPDYGEYANVNVSLEGGDGKFALTTKDSII
YLICVDQVLDREERDTYELRVMATDAGTPPLRAESSFTIQVTDVNDNPPLFDQQAYKQTI
PEVVYPGSFVLQVTARDKDQGPNGDIRYSLLKDKKSHSDWFSIDPVTGIITTAMALDYES
EPAPSVTVVATDNGRPPMSSTARVAVVLQDVNDNEPVFSSNFYNVTIKENTAVGTCFLEV
TATDADRGSFGAISYSLGSSSSSMVPAQFTVNKETGQLCSSTTLDREQGSGNYDLIVTAT
DGGGQSAVTRVRVYLEDVNDNRPSFYPVLYTVSLSTQSAPGTSVTKVTASDPDAGDNGRV
TYRTVPGGGSTFFTLNKDTGVISLARSLHGKANTLVSMVISAQDGGGLTALLNARVNVSV
VGGSVALPLFEQAQYYFTVSEEVLRGTEVGKVHAATKTGPSQDISYSISSGDPDGYFTMD
STSGALRSSVPLDHEACPSLDLEVLARYGSPPAYGTTRVRITISDVNDNAPSFLPSSSES
LLLPEVTKMGTVVYRVQATDRDSGPNGQLSFDLVSIGTGGSSGQRMFGVDRGSGELKLIG
GLNYESVPRYDLQVVAKDGGAPQLSSTFTLVVHVQAQDAQGPAFDTLTYRVELQENTPLN
TRVLQVRALNREAAGNGGGSSSSSVSYRLHPDGDAAGFGVAPDSGWLFVRSSLDREAKDI
YLLTVVATSGPGGQGAAVAGRTGSATVRVSVTDENDNSPRLSQERVFLAVRENLPAGTGF
GRVSATDRDAGLNARLTFRLLHTDRHFQINSHTGEISTRLSLDREQQSSYQLVVVVQDGG
TPARSATGTAHITLLDENDNAPVFNHAHPDRELLIQVMEDSQPGSVLGTVTAKDPDEGEN
GTLHYSLSGSRVECFTLNPTTGELRCSSSLRHGERAEYNLTVSASDHGTPPHTSTCPLRI
QVLSSSKSSAKNTLSMTLNSVEGVAPGSVIGSVRSHDQRDTLSLDGQVTYVVVGGTDRKG
TFMVDRVTGDVYLVRVLDYEEGDRYTLHVEVSDFTLAYPSSHRVQLDINVQDSNDHAPQF
TEDPVTIVIPENTQPGASIYTFQAADKDGSGPNSELRYSIQHRWPDSLHLLTLDPSTGVL
TLGQKLDHETTSSLYLVVRATDQAEDVSTRRWGSLTARVFVTDENDNVPVFSSSSAVSVM
EDQPVGFVVVYVMARDEDEGENGRVSYSIQLGNGAGRFSLNPNTGSLSILKALDREDQEV
FNLTIIAEDHGMPQLSTSQVLSVHVIDVNDEPPLFQWEELEAEVRENQEAGTTVITVTAT
DRDQGSNGQVTYGGVTEEGFSINPVTGVISTTKTLDRETQDHYTLTVYARDGGLPPNFAK
VVVRVVVQDENDNVPVFARPWYGLEVPESQSAVELCIVRAADADTGPAGDIEYRITAGDP
DGVFQLHVSSGALSTSRPLDRELRAGYNLEVVALDHGSPALSSTATVEVKVLDVNDNSPA
FSSSSYTIDVSEDAAQGTTVLEVTATDADEGENGKVLYFLSQEARGAFTVDENTGCITTA
SPVDREKRASYSFRVFAVDLSPAEPRNTSAQVTVTILDINDNAPFFIQDPLVVEVSASQS
HRVLATMRAEDKDFGANGSVFYRFAGPVTGFSINSLTGEIQGTEGIDRLSQAQRTLMVEA
MDQGTPAQSSLGVVVVYVKEQVYTGIRFSRNARDVSIQENAAKGTAVAQDQAQYPDGTRR
GISYSLFSGNRLQAFSIGTSTGEIWVQRSLGLDFEDTPRLRLVVKAETASSSSFMAVNLI
LQDINDNLPRFQLQNYIAYMREAQGYDMPIIQVVAEDVDQGQNGQVTYSIQSSGGMSGLF
KIDPVTGSITTAAIMDREIWTQTRLVVTATDRGSPRLAGSATLTVIIVDLNDNSPTIPLP
REVRIPENTLIGTEITLVTGNDVDSSPALSYSLQLDGSSQGKFGIHRYSGGVSLTAPLDY
EDRTWYTLTVRATDSQHQTEANITILVEDVNDNAPAFTHDLYQVTLPEHSPPGSPVVTVT
ATDRDSGENGKVTYRVMSSTRGGFYVDPSNGTLFIRERSEFDPENPSVSVVIEACDGGSP
PLSSVTTVQVQLSDVNDNAPVFHQSEYRATVLEDSIPGATILTLEAMDADFSRDNCGFDF
AIANGNTGNVFQIESSVRFLEGRGFQTVGTLLLAEVLDFEAVPLYNLTVVVSDRGVPQRS
SSVAAVITVGDVNDNPPAFGRAEYAVSLSEGAGAGTEIIRLTATDPDSAPNAEVQYSISS
GDEMDLFTIDQWTGALRLQRQLDREHQSSHVVIVQASDGHGHVALTPISVEVKDVNDNRP
FFPIETLTASIRENQPVNSAVTILHAIDHDTGMYGQLRYYMVEQGQGSGVTGREAFTVDQ
SSGEVRAKVTFDFEKVNSFNFVALAMDAGNHSATVTVQVYVTGEDEYDPLFVSPEFSFEV
PEGAKRGQSIGQVQANDEDGGVDGIVLFSLPSSSLYFDVNKTTGVVFLKMDGSSSRSSSS
GLGGRSKRETRTMTLDVHAHSPLDTSRVTTAQLTIDVTNTSFGLGADLNVLLIIIIAVSL
GVVVLLVVMAVVIFLLKSKRRRKNKGRDNSAVASGTTLQKLDDSKSGGSERIYHQTLPGY
AGDQGGAGAYPRGGSLDPSHSSGRGSAEAAEDDEIRMINEYPRVASISSSMQEHISARGP
DSGIQQDADQLSDISCEPAALEGSTWFKGKKLGGSLSGTMLSGQLPVYRDELGGGYLGVG
RGLNISHPKDYAFPEDGKPSVDGSLTAIVASDEELRGSYNWDYLLNWCPQFQPLANVFTE
IARLKDETAPQNQTNPRQPFQPKAKTDPKPRIDPPPLITAVAHPGAKSVPPKVPVIGRTF
PHLATLRRSPISHEGSISSAAMSPSFSPSLXPLAARSPAVSPFGVTQGPSTSMISTRDPM
LDHSPDHEMRI
NT seq
9936 nt
NT seq
+upstream
nt +downstream
nt
atgacaataacgtgtgaaggtgggcccagggccagcagtctgtgtgtgtgttcaggccta
tggaggccacggtctctcctcctgctctacacggtcctggagctggttatggtccactcc
accccggtcctaggagctctggagctccagctggatgaggagcagccggcagggaccatc
gtaggggacatcagtgctgggctaccccccggcatcaccgcctcgctgtacttcatctcc
gaccacgaagggacaggtgtgggcagcgacctcaacatcgacgagacctccgggatcatc
accacggcacgccgcctcgaccgcgagcagagggaccactacagcttcatcgccgtcacc
atgaccggggtcacagtcgaggtgtccgtcacggtcaacgacatcaacgaccacgcgccg
gcattcctcaagccaaaggcattgctgaagatcccggagcaaacggcggtgggaacacgg
gtttccctggagccggcgtcagacgcggaccgcgatcagctgaccacccaaggatatgtg
attaaggaaggcaatgtggggcaagccttcaggctggagaccaaaagagctgctaacaag
gtgttgtacctggacctggtggtgaacggtgttctggacagggagaagaggtcctcgtac
agcctggttctggaggccttcgacggggggagtcccagacgcactggcctgatgaccctg
gaggtgtttgtcaccgacatcaatgaccacgcccccgtcttcaaccagagcagataccac
gctatcatctcagagagtttaccacagggaagcaacatactgcaggtgtttgcgtccgac
gctgacgagggagacaacggtctggtcctgtacgagatcaaccgtcgccagagcgaccct
gaccgctacttcgtcatggatacgaggtcgggggtcatcactctgaaccgaccgctggac
tacgagctgaagagagtccatgagctggtggtacaggccagagacaacgccagccaccct
gaggtgaccaatgccttcgtcaccatccacgtccgagactacaacgacaaccaacccacc
atgaccattatcttcctcagcgaagacggctcgccgcgcatctcagagggcgcccagccc
ggccagtacgtggcacgcatctcggtcaccgacccagactatggagaatacgccaatgtt
aacgtttcgctagagggaggggacgggaagttcgccctgaccaccaaggacagtattatc
tatctgatctgtgtggaccaggtgttggaccgcgaggagagggacacgtacgagctgaga
gtcatggcaacagatgcaggcacccctcctctcagggctgagtcgtcctttactatccag
gtcactgacgtgaatgataatcctccactcttcgaccagcaggcttacaaacagaccatc
ccagaggtcgtctacccaggatcctttgtgctccaggttacggcccgggacaaggatcag
gggcccaatggggacatccgatacagcctcctcaaagacaaaaagagccactccgattgg
ttctccatcgacccagtgacggggatcatcaccacggcgatggcactggattatgagtcg
gagccagcgcccagcgtgacggtggttgccacggacaacgggcggcctccaatgtcgtcg
acggcgagggttgccgtggtgctgcaggatgtaaacgataacgagccggtgttctctagt
aacttctacaacgtcaccatcaaggagaatacggcagtcgggacctgcttcttagaggtg
acagcaacagatgctgaccgtggttcgttcggagcgatatcgtactccttagggtctagt
tctagcagcatggtaccggcccagtttactgtcaacaaggagactggtcagctgtgttcc
agcaccacactggatcgagagcaggggtcaggcaactacgacctcatcgtgaccgctact
gatgggggtggtcagagtgcagtgacccgtgtgcgtgtgtatctggaagacgttaatgac
aaccgtccatccttctatccggtgctctacaccgtgagcctcagcacccagagcgccccc
ggaacctccgtcaccaaggtgacggccagtgaccccgacgctggtgacaacggcagggtg
acctatcgcacggtgccgggaggaggctccaccttcttcaccctcaacaaggacacaggt
gtgatctctctcgcgcggtcgcttcacggtaaggccaacaccctggtctccatggtgatc
tcggcgcaggatggcggtggtctgacggcgctgttgaacgcccgtgtcaacgtgagcgtg
gtcgggggctctgtggcgctccctctgtttgaacaggctcagtactacttcactgtgtct
gaggaggtcctcaggggcaccgaggtgggcaaggtccacgctgccaccaagaccggtcct
tcccaggacatctcctattccatctcatccggtgacccagatggttatttcaccatggac
tctacctccggggcgctccgttcctctgtccctctggaccacgaggcctgtcccagtctc
gacctggaagtcctggctcgctacggctcgccgcccgcctacggaaccacacgcgtacgc
atcaccatctcagacgtcaatgacaacgctccctccttccttccctcctcctccgaatcc
ctccttctcccggaggtgactaaaatgggaacggtggtgtaccgggttcaggccactgac
agggactcaggtccaaacggtcagctgagttttgacctggtctcgatcggcacggggggc
agtagcggtcaaaggatgtttggcgtggaccggggaagcggggagctgaagctgattggt
ggactgaactacgaaagtgttccgcgctacgacctacaggtggtagctaaagatggtgga
gccccccagctcagctctaccttcacgttagttgtgcatgtccaggctcaggatgcgcag
ggccccgctttcgacacgctaacgtaccgcgtggagctacaggagaacacgcctctaaac
acacgcgtcctacaggtccgcgcccttaacagagaggctgctgggaacggcggtggctcc
tcctcttcctcggtgtcgtacagactgcatccggacggtgacgcggcagggttcggggtc
gccccagatagtgggtggttgttcgttcgtagctctctggaccgggaggctaaggacata
tatctactgacggtggtggcaacctctggacccggagggcagggcgcggctgtggcgggc
aggactggcagtgccacggtgagggtctctgtgacagatgagaacgacaacagtccccgt
ctgagtcaggagagggtgtttctggctgtgagagagaaccttccggcgggcacggggttc
ggccgcgtgtcggctaccgacagagacgcaggactgaatgccagactgaccttcagactc
ctgcacactgacagacacttccagatcaactcacacacaggtgagatcagtactaggtta
tctctcgacagagagcagcagtctagctaccagctggtggttgtggtacaagacggaggc
acgcccgctcgcagcgctacgggtactgcccacatcactctattggatgagaacgacaac
gcccctgtctttaaccacgcccaccccgacagggaactgctaatacaggtgatggaggat
tcccagcctggctcagtcttggggacagtaacagctaaagatcctgatgagggagagaac
ggaacactccattactcactgtcaggttccagagtggagtgtttcacattgaaccccacc
acaggagaactacgttgctcgtcctctctgagacacggtgagagggctgagtacaacctg
acagtgtcagcttctgaccacggcacacctccacacacctctacctgtcccctacgcatt
caggtcctgagttccagtaagtcttctgccaagaacactctgtccatgactctcaactca
gtggagggcgtcgccccaggctctgtcattggctctgtccggtcacatgaccagcgtgac
acgctgtcgttggacggccaggtgacgtacgtggtggtgggcgggacggaccggaagggg
acgttcatggttgaccgggttacgggagacgtgtacctggtcagagtactggactatgag
gaaggggacaggtacactctgcatgtggaggtatcagatttcacgctggcgtaccccagc
agtcacagagtacagctggacattaatgtccaagacagcaatgaccacgccccccagttc
accgaggaccccgttaccatagtgataccagagaacacccagccgggagcctccatctac
accttccaggctgctgataaggacggcagtggtcccaacagcgagctgcgttactcaatc
cagcaccgctggcctgactcccttcacctcctgacccttgacccttccactggggtcctg
accttgggtcagaagttagatcacgagaccacgtcctccctctacctggttgtcagagcg
accgaccaggcggaggacgtgtccacgcggcgctgggggtcgttgacggcccgggtgttt
gtgacggatgagaatgacaacgttcccgtgttcagctcgtcctccgccgtcagtgttatg
gaggaccagccggtcgggttcgtggttgtgtatgtaatggctcgtgacgaggatgaggga
gagaacggacgagtgtcctacagcatccaattagggaacggcgctggacgcttcagcctc
aaccccaacaccggctctctgtccattctgaaggctctagatcgtgaggaccaggaagtg
tttaacctgaccatcatagctgaggatcatgggatgccccagctgtccaccagtcaggtt
ctgtctgtccacgtgattgatgtgaacgatgagccgccgttgttccagtgggaagagcta
gaggcggaggtcagagagaaccaggaagcgggaaccacggtgatcaccgtcacggcaacg
gacagagaccaaggttctaatggccaggtgacatatggtggtgtaacagaggaaggcttc
agcatcaaccctgtgacaggagtcatcagcactaccaagaccctggacagagagacccag
gaccactacacactcacagtgtatgccagggacgggggcctgcctcctaactttgccaag
gtggtggtgcgtgtggtggtgcaggatgagaacgacaacgtgccggtattcgccaggccc
tggtacggcctagaggtccctgagagccagagcgccgtggagctgtgtattgtcagggct
gctgacgcagacactggccccgctggagacatagagtacaggatcactgctggagaccca
gacggggtcttccaactccatgtcagttcaggggccctgtccacgtctcgtcccctggat
cgggagctgcgggcagggtacaacctggaggtggtggccctggaccatggttctcctgct
ctgagcagcacagccacagtggaggtgaaagtgttggatgtaaatgacaacagtccggcc
ttcagcagcagcagctacaccatagacgtctcagaggacgctgcccagggaactacagtc
ttagaggtgacggccacagacgcagacgagggggagaacgggaaggtgctgtatttcctg
agtcaagaggctcggggcgctttcaccgttgatgaaaacactggctgtattacaacggcg
tcgccggtggaccgagagaagagggcgtcgtacagcttccgtgtgttcgctgtggacctg
tcacctgcagagcccagaaacacctcggctcaggtaaccgtgacgatcctggacataaac
gacaacgctccattcttcatccaagaccccctcgttgtcgaggtctcggccagccaatca
catcgggtcctggccaccatgcgggccgaggacaaggactttggcgccaacggctctgtg
ttctaccgttttgccgggccagtgacgggtttcagcatcaactccctaacaggggagatc
caggggacagaggggatagacaggctgagtcaggcccagaggaccctcatggtggaggct
atggaccagggaaccccggcccagtccagcctgggggtggtggtggtctatgtgaaggaa
caggtgtatacaggcatcaggttctcaaggaacgccagagacgtcagcatacaggagaac
gccgccaaaggtacggctgtagctcaggatcaggcccagtaccctgatggaaccagaaga
gggatcagctatagtctcttctctggaaacagactgcaggccttcagcatcggcactagc
acaggtgaaatctgggttcagaggtcgttgggtctggactttgaggacaccccgcgactc
cgcctggtagtgaaggctgagacggcttcgtccagctccttcatggccgtcaacctgatc
ctgcaggacataaatgacaacctgccacgcttccagctccagaactatatagcctatatg
agagaggcccagggttacgacatgccaatcatacaggtggtggcagaggacgtggaccag
gggcagaacggtcaggtgacctactctatccaatcatcaggaggcatgagcggcctgttc
aagatcgaccctgtcacgggaagcatcaccaccgccgccatcatggacagagagatctgg
actcagaccaggctggtcgtcacagcgacggacaggggcagcccgcgattggccggttcg
gccacactcacagtcatcatcgtagacctcaacgacaacagtccaacaatccctctgccc
cgggaggtccgcattcctgagaacactctgatcggcacagagatcaccttggtaacgggt
aatgacgtggactccagcccggccctgtcctacagcctccagctggacgggtcgtcccag
gggaagtttgggattcaccgctacagtggaggggtatctctgaccgcccctctggactac
gaggacaggacctggtacacactgaccgtcagggctactgactcccaacaccagactgag
gctaatatcaccatattggtggaggacgtcaatgacaatgctcctgcgttcacacacgat
ctataccaggtaacgctgccagaacattccccgccaggcagtcccgttgtcacggtgacg
gcgactgatcgtgattcgggggagaatggaaaggtcacctacagagtgatgtcgtcaacg
cgaggtggcttctacgtagaccccagcaacggtaccttgttcatcagggagaggtcagag
tttgatccagagaacccgtctgtcagtgtggtcatcgaagcctgtgacgggggatccccg
cccctctcctccgtcaccacagtacaggtccagctatcagacgtcaacgacaacgctccc
gtcttccaccaatcagagtacagggcgacagtgttggaggactccatccccggggcgacc
atcctgaccctggaggccatggacgctgatttctctcgggacaactgcggcttcgacttc
gccatcgccaatggcaacaccgggaacgtcttccagatcgagagcagcgtgcgcttcctg
gaggggcggggcttccagaccgtagggacgctcctattggccgaggtgctggacttcgag
gccgtgcccctctataacctgacggtggtggtgtcggacagaggggttccacagaggagt
tctagcgttgccgcggtgataaccgttggcgatgtaaacgataacccgccggcgtttggc
agggcggagtacgctgtgtcactgagtgaaggagctggcgccgggacggagataatacga
ctcactgccacagacccagactctgcccccaacgcagaggtccagtatagtatcagctca
ggcgatgagatggacctgttcaccatcgaccagtggaccggggcgctgcggttacagcga
cagctcgaccgcgagcaccagtcctcccacgtggtcatcgtccaggcctcggatggccac
ggtcacgtcgccctgaccccgatcagcgtagaggtcaaagatgtgaatgataacagaccg
ttcttccccatcgagactctgacggctagcatcagagagaaccagccggtcaactcagcc
gtgaccatactccacgccatagaccacgacactgggatgtacggccagctgagatactac
atggtggagcaaggtcaagggtcaggagttacagggcgagaggccttcaccgtggaccag
agttcaggagaggtcagggctaaggtgacttttgactttgagaaggtcaactcatttaat
tttgttgctctggcgatggacgccggtaaccactcggccacggtgacggtccaggtgtac
gtgactggtgaggatgagtacgacccactcttcgtctccccagagttctcgtttgaggtt
ccagagggggcgaagaggggccagagcatcggacaggtccaggcaaacgacgaggacgga
ggtgtagacggtatcgtcctcttctcgctcccaagctcctccctgtactttgacgtcaac
aaaacaaccggggtggttttcctcaagatggacgggtcttctagtcgcagcagcagcagc
gggttaggggggcggtccaaaagggagaccaggaccatgacactggacgttcacgcccac
agccctctggacacgtcccgggtcaccacggcccagctgaccatcgatgtgaccaacacg
tccttcggcctgggggcagacctcaacgtcctgctgattatcatcatcgccgtgtccctg
ggggtcgtcgtgctactggtggtcatggcggtggtcatcttcctgctcaagtcaaagaga
cgcaggaagaacaaaggacgggacaacagtgccgtggcctcgggaaccactctgcagaaa
ctggacgattccaaatctggaggatctgagaggatctatcatcagacgttaccggggtac
gccggtgaccaaggtggagcaggggcctatccccgggggggttcccttgacccctcccac
tccagcggccgtggctcagccgaggcggcggaggacgatgagatcaggatgatcaatgag
tacccccgcgtagcgtccatctcctcgtccatgcaggagcacatctcagcccgcgggccg
gactctggcatccagcaggacgctgaccagctgtcggacatctcctgtgagccggccgcc
ctggaaggaagcacctggttcaaaggcaagaagctgggagggagtctcagcgggaccatg
ctgtctggacagctacctgtctacagagacgagctgggaggagggtacctgggggtgggg
aggggactcaacatctcccatcctaaagattacgccttcccagaggacgggaagccctct
gtagacgggtccctgacagccatagtggccagtgacgaagagctaaggggcagttataac
tgggactacctgctcaactggtgccctcagttccaaccactagccaacgtcttcacggag
atcgccaggctcaaagacgagacagccccacagaaccagaccaacccacgccagcccttc
cagcccaaagccaagacggaccccaagcctcgcatcgacccaccgcccctcatcactgcc
gtggcccaccctggggccaagtccgtccccccgaaggtccctgtcatcggacgcaccttc
ccccacctggccaccctacggcggtcccccatcagccacgagggctccatctcctcagca
gccatgtcccccagcttctccccctctctgntccccctcgccgcccgctcccccgccgtc
tcccccttcggagtaacccagggcccctcgacctccatgatcagtaccagggatcccatg
ctggaccacagccccgatcacgagatgaggatctga
DBGET
integrated database retrieval system
