KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112230732
Entry
112230732         CDS       T05605                                 
Symbol
polq
Name
(RefSeq) DNA polymerase theta
  KO
K02349  DNA polymerase theta [EC:2.7.7.7]
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:otw00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:otw03400]
    112230732 (polq)
Enzymes [BR:otw01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     112230732 (polq)
DNA repair and recombination proteins [BR:otw03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   DNA polymerases
    112230732 (polq)
SSDB
Motif
Pfam: DNA_pol_A POLQ_helical HTH_61 DEAD Helicase_C ResIII Helicase_dom4_arc DEXQc_Suv3
Other DBs
NCBI-GeneID: 112230732
NCBI-ProteinID: XP_042167173
LinkDB
Position
LG33:44490273..44718455
AA seq 2588 aa
MSSTAPPAKRKCYMGRHQIIKKNSVPDPEQPLTPRRSSRLQNTHTHTLLDNTHTARNVAA
GQVCVVGDSSLDPGEEMLQVLEALDPGEMKLTHGVEMGVSLIQRGVSHASAAPAKTSHSL
TPGPEVGARVGLGPGVCEHPGLVQTVDCKDLAQCLLFSEDSEDREHAGTLPHRPTDATPP
QKNCSSRGRKRRARGRSSETTPTGRGNGSCQNADSPLDVSDDFILFRPSHLARARESAAL
QRSLRNNMSASVLTPPTGLEASTLNTTGAGLSAVFMRPDEQCDRLLLSSWGLPAAVLERY
RRHGVSSMFPWQAQCLSLGRVLQGHNLVYSAPTSAGKTLVAELLMLKRVLETRRKALFIL
PFVSLAKEKMTYLQSVFSEAGVCVEGYMGGRAAPGGFSSLDVAVCTIEKANSLLNRLIEE
DSMDLLGVVVVDELHMVGDSGRGYLLELLLTKIRYIALKHNTNNSSLSEGIQIVGMSATL
PNLSLLAGWLDAELYQTDYRPVPLKQRLKVGNSIYDSSLSLVRTFEPLITVKGDEDHILS
LCYETVSEGHSVLLFCPSKSWCEKLSDSIARAFYNLRHTGGQVVSGSALQAVALDQGGVV
DVLAQLRRTPAGLDPVLQRTVPWGVAFHHAGLTFDERDVLEGAFRGGVVRVLAATSTLSS
GVNLPARRVIIRTPTFNGRLLDPLTYRQMAGRAGRMGVDTEGESVLVCKEAERQKGVCLL
QGSLQPISSCLVKREGEGLTTSMLRAILEIIVGGVASSPQDVRLYASCTLLAAGARYDTT
GGETGGGVREGAIEACVEWLIENELISIQREGNERGRGGEWDEREGAGGQERYCPTHLGS
ATLSSSLSPPEALSIFSDLQRAMKSFVLDNDLHTLYQITPVFAEWTTIDWYQFWCLWEGL
GSSNKRVAELVGVQESFLARSVSGKLIVKTDRQRRQMAIHKRFFTTLVLQDLVNEVPLGT
VATKYNCSRGQLQSLQQSASTYAGMVTVFCRRLGWHSLELLLSQYQTRLSFGVQRELVDL
VRVSLLSATRARTLYDQGLATVAQLARAKVTEVEKALRKAVPFKSSRRAMDETEGEAAER
RSLRCVWVSGGRALTEYEAAIEIVSEARLLLQQDLALLGVTWDPGTLPTETRPNNDHDND
SPETQRDRAKSWRDQERRLNEKKEMEDGGRNVVEQKEVEGREKNKGERTGEEQRGREKNE
NPHLPSGGTSDQCFWGDSKEGRTGRGREISCTVKRRRVEEQDRCGSPELYEEEEEEEGRF
GDINSIHGNPHTYGFHDDAAPRYNFSLTDSQMEQILDNQILAGDNDDDDEPFPPPSAHRS
SVTNENSLNGSSSFLFDSLYDSSLLAGLSHDSHQSEEEKEGPVVMETSLLSNQQRQRSGL
IANQEAEEQEAVQWGESSFNLSEWGDSLLVGEHFLERRSLLRHTEGLQHEQDCGQTDRPQ
PDHGETEQQGPQPNHSNEPDRQTDTEHWWRRGGTFLVRETGREEERGDEKCSGRGKGRKG
GDGGVEKERDVRGVAVCESRLFKRPASQRDGGREREEEREKRRESEPSLLCSPGLQDIFD
RWPSMSDQPSQHPLLPPAHTLTHTAVDNQDSEDSLTGLTDLTALVRAEEDRETKDSLTGL
TALVRTEEDRETGETSVRWGETRQPLREKEGERRGETGENNVRWGETGGQLGEREEGRSG
GAHGDLIPPTQETVKLTISSVQSPHIMRTINQSPYTTRTIHHSPLTTRPLNQPTHISHPL
NQSTPTPRPIHQSAHSSRLPDQPAVSVGPQFLKPDPKTDTHSHSAPKTDPKPPCHPKTDP
KPPCHPKTDPNPPRHPKTDPKPPTKTDTKPPPKTDTKPPPQPKTLLDSPPVLSSPSSLTD
EGFTLQLSQDASLSPSSPSGGLAIIDVASDRTLFYTFIEEWRRKERYSLVPVCQTKEHGG
DGGIGGRQIRGLPRCSSGSVVLTGLAVCWGGTDCYYISLLQQQSTEMCSSLAPPPLAADL
PVGERVEQMRACLSKSLADGAGGVIMTYDIIQVYKTLVLSYGISLEGPCEDMKVASWLLD
PGSEERTLTNMVTCYCPSELLLLDGHTHSPRLRAAIDSVLIHSTMGHLTTLLEKDGLIDV
FRSVEMRSQVCLALLELNGIGFSWEECDRQKHVMQAKLSALETQAYSLAGHNFSLTSTED
VAQVLFRELRLPPNCDLSGGRGKKTLGYSRRGTGRAGLGKPFSTTKDILEKLSSLHPLPG
VILEWRRITNALTTVVFPLQREKRHHPLLVMDRIHPVSQTHTATGRVSFTEPNIQNVPKD
FEIQMASVVEESPPSQDGRRTGRGRSRLIRPPPPEGAVAFSVSMRHAFVPFTGGMVLAAD
YSQLELRVLAHLSKDKRLLQVLNGGADVFRCIAAEWKNIDLETVDDTLRQQAKQICYGII
YGMGAKSLGEQMGIEEDDAGAYIESFKDRYTGVHRFLKETVCSCVKKGFVQTLLGRRRYL
PNINSNGYTRKQAERQAVNTTVQGSAADIVKLATVNIQQCLRDTYPAAPLSHQHTESRGS
GRAVNRHRGAFFILQLHDELIYETAEEDIIQVAQIVKREMESAVKLYVKLKAKVKVGPSW
GNLQDLDI
NT seq 7767 nt   +upstreamnt  +downstreamnt
atgagctccacggcccccccggccaagaggaaatgttacatgggacgacatcagatcatc
aagaaaaacagtgtccccgaccctgagcagccactcaccccaagacgctccagtcgcctg
caaaacactcatacacacacgctgcttgacaacacacacacggcccggaatgtggctgca
ggacaggtgtgtgtggtaggagactcctccttagaccctggagaggagatgctgcaggtt
ctggaagctctggatcctggagagatgaaattaacacatggggtagagatgggggtatct
ttaatccagagaggggtatcccacgcctctgcagctccagccaagacctcccacagcctg
acaccaggaccagaggtcggggctagggttggactgggaccaggtgtgtgtgagcatcca
gggctggttcagacagtggactgtaaggacctggctcagtgcctgctgttcagtgaagac
tcagaggacagagagcatgctgggacgcttccacacagacctacagacgccacaccccct
cagaagaactgcagctccagaggtaggaagcgcagggccagggggaggagctctgagacc
acacccacaggaagaggaaatggttcctgccagaatgctgactccccattggatgtgtct
gatgacttcatcctgttcagaccctcccacctggcacgggcgagggagagcgcggcgcta
cagcggtctctgaggaacaacatgtcagcctctgttctcacgccccctactgggctggag
gccagcacactcaacactacaggtgcaggtctatcagcggtgtttatgcgtccagacgag
cagtgtgacaggttgttgttgtccagctgggggctgcctgctgcggtccttgaacgctac
cgtcgtcatggtgtctcctccatgttcccctggcaggctcagtgtctcagtctgggacgc
gtgctgcaaggacacaacctggtctactcagccccaaccagtgcagggaagaccctggtg
gcagagctgttaatgctgaagagagtcctggagaccaggaggaaagctctgtttattctg
cccttcgtatccctggccaaggagaagatgacctacctacagagtgtgttctccgaggcg
ggggtgtgtgtggagggctacatgggaggccgggctgctccaggaggtttcagtagtctg
gacgtagcagtgtgtactatagagaaggccaactccctcctcaacagactcatagaggag
gattccatggacctactgggtgtggtggttgtggatgagcttcacatggtaggagactct
ggtagaggatacctgctggaactactgctcaccaagatacgatacatcgccctcaaacac
aacaccaacaacagctccttatcagaaggtatccaaatcgtgggtatgagtgccaccctc
ccaaacctgtccctgctggctgggtggctggatgcggagctttaccagactgactacaga
cccgtcccgctgaagcagaggctcaaggtggggaacagcatctacgactccagcctctct
ctggtccgaaccttcgagcccctgatcacggtcaagggagatgaggaccacatattgtct
ctatgttatgagacagtgagtgagggtcactctgtcctcctgttctgtccttccaagagc
tggtgcgagaaactgtctgacagtattgctagagcgttctacaacctcagacacacaggt
ggtcaggtggtcagtggctcagcgctccaggctgtggcattggaccaggggggagtggtg
gatgtgttagcccagctcagacgcaccccggctgggttagacccagtcctgcaacgcacc
gtgccctggggggtggccttccaccacgctggtttgacgtttgatgagcgagacgtgttg
gagggagcattccgagggggcgtggtcagagtgttggcggcgacctcaaccttgtcatcg
ggggtcaacctgcctgcacgtagggttatcatacgaactccaacctttaatggccgtctg
ctcgatcccctgacctacagacagatggccggacgcgccgggaggatgggcgtcgacact
gagggggagagtgtgttggtgtgtaaggaggcggagcgtcaaaagggtgtgtgtcttctc
cagggctctctgcagccaatcagcagctgcctggtgaagagggagggggagggcctaacc
accagcatgctccgagccatcctggagatcattgttgggggcgtggccagctctccccag
gatgtgaggctttatgcttcctgtacgctgctggctgctggtgcccgctatgacaccaca
ggaggggagacgggaggaggagtgcgggagggagcgatagaggcatgcgtggaatggttg
attgagaatgagttgatatctatccaaagagagggtaatgagagggggagagggggagag
tgggatgagagagagggggcaggaggacaagagaggtactgccccacccacctgggttct
gccaccctctcctcctctctctcgcctcccgaggcactgagcatcttctcagatctacag
agagccatgaagagcttcgtattggacaacgacctacacacactctaccagataactcct
gtgtttgctgagtggaccacaatagactggtaccagttctggtgtctgtgggaggggctt
ggctcatccaataagagagtagcagagctggtgggtgttcaggagagcttcttggctcgg
tctgttagcgggaaactgatcgtcaagacggacagacagagacgacagatggccatacac
aaacggttcttcactactctggtccttcaggaccttgtcaatgaggttcctctgggtacc
gtggcaaccaagtacaactgtagccgcggacagctacagtctctacagcagtctgcctcc
acgtatgcaggcatggtaacggtgttctgccggcggctgggatggcacagcttggagtta
ctcctgtcccagtaccagaccaggctgagctttggggtccagagggaactggtcgacctg
gtcagggtctcactgctgagcgcaacaagggcacgaacactctacgaccagggcctcgct
acggtggcccagctggccagggcaaaggtcactgaggtggaaaaggccctacgcaaggct
gtcccctttaagagttctcgtcgtgcgatggatgagaccgagggggaggcagccgagagg
cggagcttacggtgtgtctgggtcagtggggggcgtgctctaacagaatacgaggcagcc
attgaaatcgtgtctgaggccaggctcctcctccagcaagacctcgccctattgggggtg
acctgggacccagggacactgcccacggaaacacgccctaacaacgaccatgacaatgac
tcacctgagacacagcgggaccgggccaaatcctggagagatcaagagaggaggttaaat
gagaagaaagagatggaagatggagggagaaacgtggttgaacagaaagaggtagagggg
agagagaagaacaagggagagaggacaggggaggagcagagagggagagagaagaacgag
aacccccacctcccgagtggaggaacctctgaccagtgtttctggggggacagtaaagag
ggacggactgggcgtggcagggagatctcctgcacagtcaaacgccggagggtggaagag
caggataggtgtgggtctcctgaactctacgaggaggaggaggaggaggagggaaggttt
ggggatatcaacagtatccatggcaacccccatacctatggtttccatgacgacgctgcg
ccgagatacaacttctctctgactgacagccagatggaacagatcctcgacaaccagatc
ttggcaggcgataatgatgacgatgatgaacccttcccaccccctagcgcacaccgctcc
tcagtgaccaatgagaacagtctaaacggcagtagcagcttcctattcgacagcctgtac
gacagctctttgttggctgggcttagccacgactctcaccaatcagaggaagagaaggag
ggacctgttgtcatggagaccagtctcctgtccaaccagcagcggcaacgcagcgggctc
atagccaatcaggaggcagaggaacaggaggccgtccaatggggcgagtcgtccttcaac
ctatcagagtggggcgactctctgctggttggagagcacttcctggagaggcggagcctg
ctgagacacacggagggactgcaacacgaacaagactgcggtcagaccgacagaccccaa
cctgaccatggggaaacagagcaacaaggacctcaacccaaccacagcaatgaaccagac
agacagactgacacagaacactggtggagaagaggtggaaccttcctggtcagagagacg
gggagagaagaggagagaggggatgagaaatgtagtgggagaggaaaggggagaaaagga
ggagatggaggggttgagaaggagagagatgtgagaggtgttgcagtgtgtgagagcagg
ctgtttaaaagacctgcatcacagagagatggagggagagagcgagaggaggagagagag
aagaggagagagtctgaaccctccctcctctgcagccctggactccaggacatctttgat
cgttggcctagtatgtctgaccagccctcccaacaccctctgctgccacctgctcacaca
ctcacacacactgctgttgacaaccaagactcagaggacagtttgactggtctgactgat
ctaacagcactggtacgtgctgaggaggacagagagacaaaggacagtttgactggtcta
acagcactggtacgtactgaggaggacagagagacaggagagaccagtgtgagatggggg
gagacgaggcaacccctgagggagaaagagggggagagacgaggggagacaggagagaac
aacgtgagatggggggagacagggggacaactgggagagagagaagaggggagatcaggt
ggggctcatggggacctcatccccccaactcaagaaactgttaaactgaccatctcctct
gtccaatcacctcacattatgaggactatcaaccaatcaccttacaccactaggactatc
caccattcacctctcaccaccagacctctcaaccaaccaactcatatttcccatcctctc
aaccaatcaacccccacccctcgacctatccaccaatcagctcactcctcccgcctccct
gatcaaccagcagtctctgttggtccccagttcctgaaaccagatcccaaaacagacaca
cactctcactcagcccccaaaacagaccctaaacctccctgtcaccccaaaacagaccct
aaacctccctgtcaccccaaaacagaccctaaccctccccgtcaccccaaaacagaccct
aaacctcccaccaaaacagataccaaacctccccccaaaacagacactaaacctccccct
caacccaaaacgttgctagactctcctcctgtcctctcctccccctcatctctgactgac
gagggcttcaccctccagctctcccaggatgcatctctctctcccagcagccctagcggt
gggctggccatcatagacgtggcgagcgacagaacactgttctacacctttatagaggag
tggaggaggaaggagaggtattccctcgttcctgtctgtcaaacgaaagaacacggagga
gacggagggattggagggaggcagatcagaggtcttccccggtgttcctcaggaagtgtg
gtgttaacaggactggctgtctgctggggaggaacagactgttactacatatcactacta
cagcagcagagtaccgagatgtgctccagtctggccccgcccccgctggctgctgatttg
ccagttggagagagggtggagcagatgagagcctgtctgagtaagtcattggctgacggg
gcagggggtgtgatcatgacttatgacatcatccaggtatacaagacactggtgctgagc
tatggtatctccttggaaggaccctgtgaagacatgaaggtggcgtcttggctgttggac
ccgggtagtgaggagagaactctaaccaacatggtcacctgctactgtccctcagaacta
ctgctgctggatggacacacacactcccctcgcctacgagcagccatagacagcgtgcta
atacacagcaccatgggtcacctcactaccctgctggagaaagatggactgatagatgtg
ttccgcagtgtggagatgcgttcccaggtgtgcctggcgctgctagagctgaatgggatt
ggcttcagctgggaggaatgtgacaggcagaaacacgtgatgcaggccaagctgtcagct
ctggagacacaggcctacagccttgctggacacaacttctctctgactagcaccgaggat
gtggcacaggtgttgttccgtgagctgcgcctgcctcccaactgtgatttgagcgggggg
aggggtaagaagaccctggggtacagcaggagaggaacaggacgcgccgggttggggaaa
ccgttcagtaccaccaaggacatcctggagaagctcagttccctccacccgttgccgggg
gtgattctggagtggaggaggatcaccaacgccttgacaacggtggtgtttcccctgcag
agagagaaacgacatcaccccctgctggttatggatagaatacatcctgtctcccagaca
cacactgctacaggcagagtgagcttcacagagccaaacatccagaacgttccgaaggac
tttgagatccagatggcctctgtggtggaggagagcccgccctcacaagatggccgccgg
actggtcggggccgttccaggctgatcagacctcctcctcctgaaggggccgtggccttc
tccgtcagcatgagacacgcctttgtacctttcacaggagggatggtattagcagcagat
tattcccagttggagctcagagtgttggctcacctctctaaggacaaacgtctgctacag
gtgttgaatggaggagctgatgtgttccgctgtatcgctgctgagtggaagaacattgac
ctggagactgtagacgacaccctgagacaacaggctaaacagatatgttatggtataatc
tatgggatgggagccaaatctctgggagagcagatggggatcgaggaggacgatgcaggt
gcttatatcgagagcttcaaggaccgatacacaggtgtccataggttcctgaaggagaca
gtgtgtagctgtgtgaagaagggttttgtccagactctactggggaggaggagataccta
cctaacatcaacagcaacggctacaccaggaaacaggcggagcgtcaggctgttaacacg
acagtccaggggtcagccgctgacatcgttaaactggctaccgtcaacatccagcaatgt
cttagagacacctaccctgctgctcctctctcacaccaacacacagagagccgtggtagt
ggcagggctgttaaccgtcatcgtggggcgtttttcatcctgcagcttcatgatgaactc
atctatgagaccgcagaggaggacatcatacaggtggctcaaatagtgaagagagagatg
gagagtgctgtgaagctctatgttaagctgaaagccaaggtcaaggtgggacccagctgg
gggaacctgcaggacctggacatctga

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