Oncorhynchus tshawytscha (Chinook salmon): 112230747
Help
Entry
112230747 CDS
T05605
Name
(RefSeq) spectrin alpha chain, non-erythrocytic 1-like isoform X1
KO
K06114
spectrin alpha, non-erythrocytic (fodrin)
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04210
Apoptosis
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
112230747
09142 Cell motility
04820 Cytoskeleton in muscle cells
112230747
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
otw04812
]
112230747
Cytoskeleton proteins [BR:
otw04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
112230747
Intermediate filaments
Intermediate filament-binding proteins
112230747
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
EFhand_Ca_insen
SH3_1
SH3_9
EF-hand_1
EF-hand_7
EF-hand_6
SH3_2
EF-hand_8
SH3_3
SH3_10
SCO1-SenC
Motif
Other DBs
NCBI-GeneID:
112230747
NCBI-ProteinID:
XP_042167467
LinkDB
All DBs
Position
LG33:complement(2627380..2686273)
Genome browser
AA seq
2509 aa
AA seq
DB search
MATIKIQDLGQQRETSRLPRETLATTSPQRMDTSGVKVLESADDIQERRQQVLDRYRRFK
ELSGVRRQKLEDSYRFQFFRRDADELEKWIQEKLQIASDENYKDPTNLQGKLQKHQAFEA
EVQANAGAIIKLDETGNLMTSEGHFASETIRTRLEELHRLWDLLLQKTKEKGVRLLQAQK
LVQYLRECEDALDWISDKEAMATSEELGQDLEHVEVLQKKFEEFQTDLAAHEERVNEVNQ
LAGKLSQESHPEAELIVRKQEEVNAAWQRLKGLAQQRQGRLFGAAEVQRFNRDVDETISW
IKEKEQLMASDDFGRDLASVQALLRKHEGLERDLAALEDKVNTLGGEAERLQQTHPQNAS
QIHLKRDELITNWEQIRTLAAERHAHLNDSYRLQRYTADFRDLTSWVTEMKALINADELA
NDVAGAEALLDRHQEHKGEIDAHEDSFKATDEAGQALLNTGHYALEEVKEKLGVLTEEKE
SLLELWEVRRQQYEQCMDLQLFYRDTEQVDNWMSKQEAFLLNEDLGDSLDSVEALLKKHE
DFEKSLSAQEEKITALDEFATKLIQNNHYAKEDVATRRDALLSRRNALHERAQSRRAALE
DSFHLQQFFRDSDELKSWINEKMKTATDEAYKDPSNLQGKVQKHQAFEAELSANQSRIDA
LQKSGQELLDGKHYAADEVSVRMDEVSSQWKKLLEATELKGIKLREANQQQQFNRNVEDI
ELWLYEVEGHLASDDYGKDLTSVQNLQKKHALLEADVTAHQDRIDGITIQARQFQEAGHF
DGDNIKRKQEALVARYDALRDPMAARKQKLSDSLRLQQLFRDVEDEETWVREKEPIAAST
NRGKDLIGVQNLLKKHQALQAEIAGHEPRIKAVTQKGEAMVEEGHFAGGEVKVKLEELNG
RWDTLKGKAGQRRQDLEDSLQAQQYFADANEAESWMREKEPIVGSPDYGKDEDSAEALLK
KHEALMSDLSAYGTSIQALKEQAQSCRQQVAPTDDETGKELVLALYDYQEKSPREVTMKK
GDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDPTQSSSRENLLDEQGSIGLRQDQIE
NQPGAKEAYSVSVRMKQVEELYGTLLELGEKRKDMLEKSCKKFMLFREANELQQWINEKE
GALTNEEVGSDLEQVEVLQKKFDDFQKDLKANESRLRDINKVASELESEGLMAEEANMVQ
AQEQVMVGSVPGKDDTDSKNASPWKNVRLAVQTTANFNTIKELNNRWRSLQQLAEERSNM
LGSAHEVQRFHRDADETKEWIEEKNQALNTDNYGHDLASVQALQRKHEGFERDLAALGDK
VKSLGETAERLIQSHPEAVDDIQEKCTELNTAWSSLVARADQRKDKLGNSHDLQRFLSDF
RDLMSWINGIRSLVSSEELAKDVTGAEALLERHQEHRTEIDARAGTFQAFEQFGQQLLAR
GHYASPEIQQKLEALDHERADLEKAWVQRRMMLDQCLELQLFNRDCEQAENWMAAREAFL
ASDDKGDSLDSVEALIKKHEDFDKAINVQEEKIAALQSFADQLVGADHYAKPEISKRRNE
VLDRWRRLKAQMIEKRSKLGESQTLQQFSRDVDEIEAWISEKLQTATDESYKDPTNIQLS
KLLSKHQKHQAFEAELHANADRIRGVIDTGNALIQRGACAGSEDAVQSRLGALDEQWQFL
VNKSAEKSQKLKEANKQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLL
EADISAHEDRLKDLNGQADSLTASTAFDPTQVKDKRNAVNGRFAKIKSMAAGRRAKLNES
HRLHQFFRDLDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELGAHEPAIQSV
QDTGKKLSDDNTIGQEEIEQRLGQFEEHWTELKDLAAARGQRLEESLEYQQFVANVEEEE
AWINEKLNLVGSEDYGDTLAAVQGLLKKHEAFETDFTVHRDRVNDVCSNGDELINKNNHH
VDSISAKMSSLRGKVSELERAAAMRKAKLDENSAFLQFNWKADVVESWIGEKENSLKTDD
YGRDLSSVQTLLTKQETFDAGLQAFQQEGITNITALKDQLLAAKHVQSKAIEARHAALMK
RWNKLLDNSQARKKKLLEAQDHFRKVEDLFLTFAKKASAFNSWFENAEEDLTDPVRCNSL
EEIRALRDAHEAFRSSLSSAQADFNQLAELDRQIKSYQVVSNPYTWFTMEALEETWRNLQ
KIIKERELELQKEQRRQEENDKLRQEFAQHANAFHQWLQETRTYLLDGSCMVEESGTLES
QLEATKRKHQEIRAMRSQLKKIEDLGAAMEEALILDNKYTEHSTVGLAQQWDQLDQLGMR
MQHNLEQQIQARNTTGVTEDALKEFSMMFKHFDKEKSGRLNHQEFKSCLRSLGYDLPMVE
EGEPDPEFESILDTVDPNRDGNVSLQEYMAFMISRETENVKSSEEIESAFRALSVDAKPY
VTKEELYQNLSKEQADYCISHMKPYLDSKGREMPSAFDFVEFTRSLFVN
NT seq
7530 nt
NT seq
+upstream
nt +downstream
nt
atggccaccattaaaatccaagacctagggcaacagcgggagacaagccgtctgcctagg
gagactttggccaccacctctcctcagagaatggataccagtggggtgaaagtgctggag
tctgcagacgacatccaggagcgccggcagcaggtgttggatcgctaccggcgcttcaag
gagctgtcgggtgtgcgccggcagaagctggaggactcctaccgtttccagttcttccgc
cgcgatgccgatgagctggagaagtggatccaggagaagctgcagatcgcctccgatgag
aactacaaggaccccaccaacctccagggcaagctccagaaacaccaggccttcgaggcg
gaggtgcaggccaacgctggagccatcatcaagcttgatgagactggcaacctcatgacc
tccgagggtcactttgcctctgaaaccatccgcactcgtctggaggagctgcaccgtctt
tgggacctgctgctgcagaagaccaaggagaaaggtgttcgtctgctgcaggcccagaag
ctggtgcagtacctgcgcgagtgtgaggatgccctggactggattagtgacaaggaggcc
atggccacctcggaggagctgggccaggacttggagcatgtggaggtgctccagaagaag
tttgaggagttccagacggacctggcggctcacgaggagcgtgtgaacgaggtgaaccag
ctggcgggcaagctgagccaggagtcccaccccgaggcggagctcatcgtccgcaagcag
gaggaggtgaacgccgcctggcagaggctcaagggcctggcgcagcagaggcagggcagg
ctgttcggagccgccgaggtgcagcgcttcaacagggatgtggacgagaccatcagctgg
atcaaggagaaggagcaactcatggcgtccgatgactttggccgggacctggccagcgtt
caggccctgctgcgcaagcacgagggcctggagagagacctggctgccctggaggacaag
gtcaacactctgggcggagaggctgaacgtctgcagcagacccacccccagaacgcttcc
cagatccacctgaagagggacgagctcatcaccaactgggagcagatccgcacgctggcc
gccgagcgccacgcccacctcaacgactcctacaggctgcagcgctacactgcagacttc
cgtgacctgaccagctgggtgacggagatgaaggccctgatcaacgctgacgagctggcc
aacgacgtggccggagccgaggctcttctcgaccgccaccaggagcacaagggtgagatt
gatgcccatgaggacagcttcaaagccacggacgaagccggtcaggccttgctcaacacc
ggacactacgccttagaggaggtcaaggagaagctgggtgtcctgactgaagagaaggag
tctctgctggagctgtgggaggtacgcaggcagcagtacgagcagtgcatggacctgcag
ctcttctacagggacacagagcaggtcgacaactggatgagcaagcaagaggctttcctt
ctgaacgaggaccttggtgactctctggacagcgtggaggccttgcttaagaaacacgag
gactttgagaagtccctcagcgcccaggaggagaagatcactgccctggatgaatttgcc
accaaactgatccagaacaaccactatgccaaggaggatgttgctactcgtagagatgct
ctgctgagccgccgcaacgccctgcacgagcgtgctcagtcccgccgcgccgctctggag
gactccttccacctgcagcagttcttccgtgactcggacgaactcaagagctggatcaat
gagaagatgaagacggccaccgacgaagcctacaaggacccgtccaacctacagggcaag
gtccagaagcaccaggccttcgaggcagagctgtcagccaaccagagccgcatcgatgct
ctgcagaagtctggccaggagctcctagacgggaagcactacgccgccgacgaggtgtct
gtacgcatggacgaggtcagctcccagtggaagaagctgctggaggccaccgaactcaaa
ggcatcaagctgcgcgaggccaaccagcagcagcagttcaacagaaacgtggaggacatt
gagctgtggctgtatgaggtcgagggccacctggcttcagatgactacggcaaagatctg
accagcgtccagaacctgcagaagaagcacgccctgctggaggctgacgtgactgcccac
caggaccgcatcgatggcatcaccattcaggcgcgtcagttccaggaagccggtcacttt
gacggcgacaacatcaagcgcaagcaggaggcgctggtggcgcgctacgatgccctccgc
gaccccatggccgcccgcaagcagaagctgtcagactccctgcggctgcagcagctcttc
agggacgtggaggacgaggaaacctgggtccgggagaaggagcccatcgccgcctccacc
aaccggggaaaagacctgatcggcgtccagaacttgctgaagaagcaccaggccctgcag
gcggagatcgccggccatgagccccgcatcaaggccgtcacccagaaaggagaggctatg
gtggaggaaggccactttgctgggggggaggttaaggtgaagctggaggagctgaacggc
cgctgggacaccctgaaaggcaaggccgggcagcgcaggcaggacctggaggactcactg
caggcacagcagtacttcgccgacgccaacgaggcagagtcgtggatgagggagaaagag
cctatcgtgggcagtcccgactacggcaaggatgaggattcggctgaggccctgctgaag
aagcacgaagcactgatgtctgacctgagtgcttatggcaccagcatccaggctttgaag
gagcaggcccaatcctgcaggcaacaagttgcgcccaccgatgatgagactggcaaggag
ctggtgctggccctctatgactaccaggagaagagcccccgtgaggtcaccatgaagaag
ggagacatcctcaccctgctcaacagtaccaacaaggactggtggaaggtggaggtgaac
gaccgccagggctttgtgccagcggcctacgtcaagaagctagaccccacccagtcctcc
tccagggagaacctgctggatgagcagggcagcatcggcctccgccaggaccagatcgag
aaccagccgggcgcaaaggaggcgtacagtgtgtctgtacgcatgaagcaggtggaagaa
ctgtacggcactctcctggagctgggcgagaaacgcaaggacatgctagaaaagagctgc
aagaagttcatgctgttccgcgaggctaacgaactgcagcagtggatcaacgagaaggag
ggagccctcaccaacgaggaggtgggctctgacctggagcaggtggaggtgctgcagaag
aagtttgacgacttccagaaggacctgaaggccaacgagtctcgtctgagggacatcaac
aaggtggcatctgagctggagtctgagggcctaatggcagaggaggcaaacatggtccaa
gctcaggaacaagtaatggtgggttctgttcctggcaaggatgatactgattccaaaaat
gcttcaccatggaagaatgtacgcttggctgttcaaacgacggctaactttaatactatc
aaggagctgaacaaccgctggcggtccctgcagcagctggctgaggagaggagcaacatg
ctggggagtgcccatgaggtgcagaggttccacagggatgcggatgagaccaaggagtgg
atcgaggagaagaaccaggccctgaacaccgacaactacggccacgacctggccagcgtt
caggctctacagcgcaaacatgagggctttgagagagacctggccgccttgggagacaag
gtgaagtctctgggggagacggcggagcgtctgatccagtcccacccggaggctgtggac
gacatccaggagaagtgcacagagctcaacacggcctggagcagcctagtggcgcgtgcc
gaccagcgtaaggacaagctgggcaactcccacgacctgcagcgcttcctctccgacttc
agggacctgatgtcctggattaacggcatccgaagcttggtctcctcagaggaactggcc
aaagatgtgaccggggctgaggccctgctggagagacaccaggagcaccgtactgagatc
gacgcccgtgcgggcaccttccaggcctttgagcagtttggccagcagctgttggcacgt
ggccactacgccagtccggagatccagcagaagctggaggccctggaccacgagagggcc
gacctggagaaggcctgggtccagagacgcatgatgctcgaccagtgcctggagctccag
ctgttcaaccgtgactgtgagcaggctgagaactggatggcagcgcgcgaggccttcctg
gccagcgacgacaagggcgactccctggacagcgtggaggccctcatcaagaaacacgag
gactttgacaaggccatcaatgtgcaggaggagaagatcgctgccctgcagtcctttgct
gaccagctggtcggcgctgaccactacgccaagcctgagatctccaaacgtcgcaacgaa
gtcctggacaggtggcgccgtctgaaggcccagatgattgagaagcgttccaagctgggt
gagtcccagaccctgcagcagttcagccgtgatgtggatgagattgaggcctggatcagc
gagaagctgcagacggccaccgacgagtcctacaaggaccccaccaacatccagttgtcc
aagctgctgagtaagcaccagaagcaccaggccttcgaggcggagctgcacgccaacgca
gaccgcatccgtggggtcatcgacacaggaaacgccctcatccagagaggggcctgcgcc
ggcagtgaggacgcagttcagtcgcgtctcggtgccctggatgagcagtggcagttcctg
gtgaacaagtcagcagagaagagccagaagctcaaggaagccaacaagcagcagaacttc
aacactggcatcaaggactttgacttctggctatctgaggtcgaggcccttcttgcctct
gaggactatggcaaagacctggcctccgtcaacaacctgctgaagaaacaccagcttctg
gaagccgacatctctgctcatgaggatcgcctgaaggacctgaacggccaggctgacagc
ctgacggccagcacggccttcgaccccacccaggtcaaggacaagcgcaacgccgtcaat
ggacgcttcgccaagatcaagagcatggctgccggccgccgcgccaagctcaacgagtct
caccgcctgcaccagttcttcagggacctggacgatgaggagtcttggataaaagaaaag
aaattgcttgtgagttcagaagactatggacgtgatttgacaggagtgcagaatctaagg
aaaaaacacaagaggctggaggctgagctgggggcccacgagccagccatccagtctgtg
caggacactgggaagaagctgtctgatgacaacaccatcggccaggaggagattgagcag
aggctgggccagtttgaggagcactggacggagctgaaggacctggctgcagcaagggga
cagaggctggaggagtcgctggaataccagcagtttgttgcgaatgttgaagaggaggaa
gcctggatcaacgagaagctgaatctggtgggaagcgaagactacggggataccctggcc
gccgtgcagggcctgttgaagaagcatgaggcgtttgagactgacttcaccgtgcacagg
gacagagtgaatgatgtgtgttccaacggagacgagctcatcaacaagaacaaccaccac
gtggacagcatctcagccaagatgtcgtccctgcggggcaaggtgtctgagctggagagg
gccgctgccatgaggaaagccaagctggacgagaactctgccttcctgcagttcaactgg
aaggccgacgtggtggagtcctggatcggtgagaaggagaacagcctgaagactgatgac
tacggacgagatctctcctctgtgcagacgttgctcactaagcaggagacgtttgacgct
ggtcttcaggccttccagcaggagggcataaccaacatcacggccctcaaggaccagctg
ctggcggccaagcacgtccagtccaaggccattgaggcccgccacgccgccctcatgaag
cgctggaacaagctgctagacaactcacaggctcgcaagaagaagctgctggaggcccag
gatcacttcaggaaggtggaagacctgttcctgacctttgccaagaaggcatcggccttc
aatagctggtttgagaatgcagaggaggacctgacggatccggtgcgctgcaactcgctg
gaggagatccgggctctgcgcgatgcccacgaggccttccgctcgtcgctgagctcggcg
caggccgacttcaaccagctagctgagctggaccggcagattaagagttaccaggtggtg
tccaacccctacacctggttcaccatggaggccctggaggagacctggagaaacctgcag
aagatcatcaaggaacgagagctagagttgcagaaggagcagagaaggcaggaggagaac
gacaagctgcggcaggagtttgcgcagcatgccaacgcattccaccagtggctgcaggag
accaggacatatcttctggatgggtcctgtatggtagaagagtccggaaccttggaatca
cagcttgaggcaaccaagcgtaagcaccaggagatccgggccatgcgcagccagctgaag
aagatagaggacttgggagcagccatggaggaagccctgatcctggacaacaagtacaca
gaacacagcacggtgggcctggcccagcagtgggaccagctagaccaactaggaatgagg
atgcagcacaacctggagcagcagatccaggccaggaacaccactggagtgacagaggat
gccctgaaggagttcagcatgatgttcaagcattttgacaaagagaagtctggccgttta
aaccatcaggagttcaagtcgtgtctgcgctcgctgggttacgacctgccaatggtggag
gagggagaaccagaccccgagtttgagtccatcctcgacacggtcgatcccaacagggat
ggcaacgtgtccttgcaggagtacatggctttcatgatcagccgcgaaacagagaacgta
aagtccagcgaggaaattgagagcgccttccgagccctcagcgtcgatgccaagccctac
gtcaccaaggaggagctctaccagaacctgagcaaggaacaggcagactactgcatctcg
cacatgaagccctatctagacagcaagggccgggaaatgccatctgccttcgactttgtt
gaattcacccgctcgcttttcgtcaactga
DBGET
integrated database retrieval system
