Oncorhynchus tshawytscha (Chinook salmon): 112230822
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Entry
112230822 CDS
T05605
Name
(RefSeq) nucleolysin TIA-1 isoform X1
KO
K13201
nucleolysin TIA-1/TIAR
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112230822
03041 Spliceosome [BR:
otw03041
]
112230822
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
112230822
Spliceosome [BR:
otw03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
112230822
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
RRM_Nup35
Calcipressin
Motif
Other DBs
NCBI-GeneID:
112230822
NCBI-ProteinID:
XP_024252921
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Position
LG33:7630540..7646202
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AA seq
390 aa
AA seq
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MMDDEQPKTLYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVDTAGNDPYCFVEFYEHRHA
AASLAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTDDIKAAFAPFG
RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPK
ATYETNTKHLSFEEVVNQSSPSNCTVYCGGVTAGLTEQLMRQTFTPFGQIMEIRVFPDKG
YSFVRFNSHEGAAHAIVSVNGTSIEGHVVKCYWGKETTDMVSPMQQVQVPQLTPQQNKIG
FAAQPYGQYAQWYGNAQQIGQYVPNGWQVPTYGVYGQAWNQQGFNHLQAGAGWTGVGAVS
NGGVVEPGQGVNGAVLANQSVMGTAGYHTH
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgatggacgacgaacaacccaagaccctgtatgtgggaaacctgtcccgggatgtgacc
gaagccctcatcatgcagctgttcggccagatcggaccctgcaagagctgtaaaatgata
gtagatacggcaggtaatgacccctactgctttgtggagttctacgaacacaggcacgct
gccgcgtcactcgcagccatgaacggtcgtaaaataatgggtaaggaggtcaaagtgaac
tgggctacaacccctagcagccagaagaaagacacaagcaatcacttccacgttttcgtc
ggagacctcagtcctgaaatcaccacggatgacatcaaagctgcctttgccccctttggg
aggatatctgatgcccgggtggtgaaagacatggctactggcaaatctaaaggctatggc
tttgtgtccttcttcaacaaatgggatgcagagaatgccatccaacagatgggaggtcag
tggttgggaggacggcagatcaggaccaactgggccaccaggaagccccctgcgcccaaa
gccacctacgagacgaacacaaagcacctgtcgtttgaggaggtagtgaaccagtccagc
cccagcaactgtaccgtctactgtggaggagtcactgcagggcttacagaacaactaatg
aggcagaccttcacccccttcggtcagatcatggagatcagagttttcccagacaaaggc
tactcgtttgtgaggttcaactcccacgagggagcggcccacgccatagtgtcagtgaac
gggacgtccatagagggtcacgtggtgaagtgttactgggggaaggagacaacagacatg
gtcagccccatgcagcaggtacaggtgcctcagctcacaccgcagcagaacaaaattggt
tttgcagcgcagccctacggccagtatgcccagtggtacggtaacgcccagcagattggc
caatacgtgcccaacgggtggcaggtgccgacctacggagtctacggacaggcctggaac
cagcagggcttcaatcatttacaggcgggtgcagggtggacgggcgttggagcggtcagt
aatggcggcgtggtggagcctggacagggagtcaacggggcggtgctggccaaccagtcg
gtcatgggcaccgctggctaccacacccactga
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