Oncorhynchus tshawytscha (Chinook salmon): 112230871
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Entry
112230871 CDS
T05605
Symbol
ddx56
Name
(RefSeq) probable ATP-dependent RNA helicase DDX56 isoform X1
KO
K14810
ATP-dependent RNA helicase DDX56/DBP9 [EC:
5.6.2.7
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
otw03009
]
112230871 (ddx56)
Enzymes [BR:
otw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112230871 (ddx56)
Ribosome biogenesis [BR:
otw03009
]
Eukaryotic type
Pre-60S particles
Helicases
112230871 (ddx56)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Phage_YunG-like
AAA_22
Motif
Other DBs
NCBI-GeneID:
112230871
NCBI-ProteinID:
XP_024252975
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Position
LG33:9645701..9653398
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AA seq
561 aa
AA seq
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MATDRLQFHEMGIDDRILKALADLGWAQPTLIQEKAIPLALEGKDILARARTGSGKTAAY
AVPVIQRILTSKQNVREQAVRVLILVPTKELGQQVQAMIRQLTAYCARDVRVADISGKAD
LSAQRPILMEKPDVVVGTPSRVLAHLSAQSLDLQASLETLVIDEADLLFSFGFEADLKSL
LCHLPKIYQSFLMSATLSEDVQALKELLLHNPVILKLQGSQLPDSSQLQQYSVQCEEEDK
FLLIYTLLKLHLVQGKTLVFVGAVERCYRLKLFLEQFSIPTCVLNSELPVHSRCHIITQF
NQGFYDYIIATDEQVLADPTTTTAEAAEGKGKKKKKKNAGRAKDKEYGVSRGIDFQNVSN
VINFDFPTTVESYIHRVGRTARADNPGTALTFISHTELPLLAEVEDALIGDNTECALKPY
GFKMEEIEGFRYRCRDAMRSVTKQAVREARLKEIKQELLNSEKLKTYFEDNPRDLQLLRH
DKDLHPAVIKPHLKNVPEYLIPPTLRGVANPMSSRKRRRREKPKPDGVVKTTFKKDFRGK
NPLKSFHYTGGRSRGGKAGKS
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atggctaccgacaggctgcagttccatgaaatgggcatagatgatcgcattttaaaggcg
ctggcggacttgggctgggctcagcccactttgatccaggagaaagccattccactggca
ctggagggcaaggacattctagcccgggccaggactggctcaggaaaaacagctgcttac
gctgtgcccgtcatccagcgtatcttgacatccaaacaaaatgtccgtgagcaggcagtg
agagtgttgatcctggttcctaccaaggagctggggcagcaggtacaggccatgatccgc
cagctgactgcctactgtgccagagacgtgagggtggcagacatctccggcaaggctgac
ctgtctgcccagaggcccatcctgatggaaaagccagatgtggtagtggggaccccctct
agggttctggcccacctcagtgcccagagcctggacctgcaggcctcgctggagaccctg
gtcatagatgaggctgacctgctcttctccttcggtttcgaggccgacctcaagagcctg
ctatgccacctgccaaagatctaccagtccttcctaatgtcagctactctcagtgaggat
gtccaggccctgaaggaactgctgctgcacaatcctgtgattttaaagctgcagggctcc
cagctgccagacagctcccagctgcagcagtacagtgttcagtgtgaggaagaggacaag
ttcctgctcatctacaccctgttgaaactgcacctggttcagggcaagaccctggtgttt
gttggggcagtggagaggtgctacagactcaaactgtttctggaacagttcagcattccc
acctgtgtactcaactctgagctgcctgtccactccaggtgtcacatcataacccagttt
aaccaggggttctatgattacatcatcgccacggacgagcaggtattggctgatcccacc
accaccacagcggaggctgccgaggggaaagggaagaagaagaagaagaagaatgcaggg
agagccaaggacaaggagtacggtgtctccagaggaatcgacttccagaatgtctccaac
gtcatcaactttgactttcccaccaccgtggagtcctatatccaccgtgttggccgaacg
gcacgagcagacaacccaggcaccgctctcaccttcatctcacacacagagctccccctg
ctggcagaggtggaggacgcactcattggcgataacaccgagtgtgctctgaagccgtac
gggtttaaaatggaggagattgagggcttcagataccgctgccgggatgccatgaggtca
gtaactaagcaggcggtgagggaggccagactgaaagagatcaaacaggagctgctcaac
tcagagaaactcaagacgtactttgaggataacccccgagacctgcagctgctgaggcac
gataaagacctgcaccctgctgtcatcaagccacacctgaagaacgtaccagaatacctc
atccctccgacgctgaggggagtggccaacccaatgtccagcaggaagaggaggaggaga
gagaagcccaaacctgacggggtcgtcaagacgacctttaagaaggacttccggggcaag
aaccccttgaagagtttccactacaccggggggaggagccgagggggcaaggctggcaaa
tcctag
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