Oncorhynchus tshawytscha (Chinook salmon): 112230916
Help
Entry
112230916 CDS
T05605
Name
(RefSeq) transitional endoplasmic reticulum ATPase isoform X1
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04137
Mitophagy - animal
otw04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
112230916
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
112230916
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112230916
03009 Ribosome biogenesis [BR:
otw03009
]
112230916
04131 Membrane trafficking [BR:
otw04131
]
112230916
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
otw04147
]
112230916
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
112230916
Ribosome biogenesis [BR:
otw03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
112230916
Membrane trafficking [BR:
otw04131
]
SNARE
SNARE associated proteins
Others
112230916
Autophagy
Aggrephagy
Other aggrephagy associated proteins
112230916
Exosome [BR:
otw04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
112230916
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_5
AAA_33
AAA_2
TIP49
AAA_22
AAA_14
RNA_helicase
AAA_28
Vps4_C
AAA_18
nSTAND3
Parvo_NS1
Mg_chelatase
AAA_17
IstB_IS21
ATPase
ATPase_2
AAA_7
DUF815
Bac_DnaA
Viral_helicase1
ABC_tran
AAA_24
NB-ARC
ResIII
TsaE
Zeta_toxin
NACHT
Sigma54_activat
SLFN-g3_helicase
bpMoxR
UFD1
KAP_NTPase
Zot
Motif
Other DBs
NCBI-GeneID:
112230916
NCBI-ProteinID:
XP_024253066
LinkDB
All DBs
Position
LG33:complement(17384196..17429207)
Genome browser
AA seq
881 aa
AA seq
DB search
MTKKRFILIGSIESRIRSAVCLLHQSPIKSNCRRCTHWTGKYTYEVTNYKETIIYSLNIP
SGTPWLQEERACLLRECRKKPRSKNDLATAILKQKTRPNRLVVDESLNEDNSVVSLSQAK
MDELQLFRGDTVLMKGKKRRETVCIVLSDDTCSDEKVRMNRVVRNNLRVRLGDVISIQPC
PDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKV
VETDPNPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGVRKQLAQIKEMVELPLR
HPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESN
LRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMA
ATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLSDDVDLEQVANQTHG
HVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMSSLAVTMDDFRWALSQSNPSALR
ETVVEVPNISWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKT
LLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKA
RGGNVGDGGGAADRVINQILTEMDGMSSKKNVFIIGATNRPDIIDPAILRPGRLDQLIYI
PLPDEKSRINILNANLRKSPIAKDVDLDFLAKMTNGFSGADLTEICQRACKMAIRESIEN
EIRRERERQTNHLAMEVEEDDPVPEIRKDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQS
RGFGSFRFPTSSAPGAGPSQGSAGGSGGTVFNEDNDDDLYG
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atgacaaagaaacgttttattctgattggctctattgaatcgagaatccgctccgctgtc
tgtttactgcatcagtcgccgatcaaatcaaactgtcggcgttgcactcactggacagga
aaatacacatatgaggttacaaactataaagaaaccatcatttattcgttgaacatacca
agcggaacaccatggcttcaggaggagagagcctgcctgttacgtgaatgccgtaagaag
ccaagatcgaaaaatgatctagccacagcgattttaaagcagaagaccaggcccaaccgg
ttggttgtggatgaatctctcaatgaggacaacagtgtggtttctctgtctcaggcaaag
atggatgagttgcagctgttcaggggagacacagtgctgatgaaaggaaagaagagacgg
gagacggtatgcatcgtgctctctgacgacacctgctccgatgagaaggtccgcatgaac
agagtggtccgcaacaacctgagagtccgcctgggagatgtcatcagtattcagccctgc
ccagatgtgaagtatgggaaacggatccatgttctgcccatcgatgacactgtagagggg
atcacagggaacctgtttgaggtctacctcaagccctacttcctggaggcctacaggccc
atcaggaaaggggacattttcctggtgaggggaggcatgcgtgcggtggagttcaaggta
gtggagacggatcccaacccctactgcatcgtggccccagacactgtcatccactgtgag
ggcgagcccatcaaacgagaggatgaggaggagtctctgaatgaggttggctatgatgac
attgggggtgtgaggaagcagctggcccagattaaggagatggtggagctgcccctgaga
cacccagcactgttcaaggccatcggcgtcaagcctccaaggggtatcctgctgtatgga
ccccctggaacaggaaagactctgattgcacgtgccgtggccaacgagaccggagccttc
tttttccttatcaatgggcctgagatcatgagtaaattggctggagagtctgagagtaac
ctgaggaaggcctttgaggaggctgagaagaatgcccccgccatcatcttcattgacgag
ctggacgccattgcaccaaaaagagagaagacacacggtgaggtggagaggcgcattgtg
tcccagctcctcacactcatggatggcctaaagcagcgcgctcacgtcatcgtcatggca
gccaccaacagacccaacagcattgaccccgccctgaggagatttgggcgttttgacagg
gaggtggacatcggcatccctgatgccacaggcagactggagatcctccagatacacacc
aagaacatgaaactgtccgacgacgtggacctcgagcaggttgccaatcagactcacggc
catgtgggtgctgacctggccgctctgtgctctgaagccgccctgcaggccatcaggaag
aagatggatctcatcgacctggaggacgaaaccatcgacgccgaggtcatgagctccctg
gctgtcaccatggatgacttcagatgggctctaagccagagcaacccttcagccctgaga
gagacggtggttgaggtgcccaacatcagctgggaggacatcggaggtctggaggacgtc
aaaagggaactccaggagcttgtacagtacccagtggagcacccagacaagttcttgaag
ttcggcatgaccccgtccaagggcgtgctgttctacgggcccccaggttgtggtaagacc
ctgctggccaaagctatcgccaacgagtgccaggccaacttcatctccatcaaaggtcct
gagctgctcaccatgtggttcggagagtctgaggccaacgtccgcgagatcttcgacaag
gctcgccaggccgccccctgcgtgcttttctttgacgagctggactccatcgccaaggca
cgtggcggcaacgtgggtgatggtggcggagcggccgaccgtgtcatcaaccagatcctg
acagaaatggacggcatgtccagcaagaagaacgtcttcatcatcggtgccaccaacagg
cctgatatcatcgacccggccatcctgaggcccggaagactggaccagctcatctacatc
cccctgccagatgagaagtcccgcatcaacatcctaaacgccaatctcaggaagtcaccc
atcgccaaggatgtggacttggatttcctggccaagatgaccaatggtttctctggtgct
gacctgacagagatctgccagagggcctgtaagatggccatcagggagtccattgagaat
gagatcaggagggagagagagcgtcagaccaaccacttagccatggaggttgaggaggac
gaccctgtgccagagatccgtaaagaccactttgaggaggctatgcgtttcgcccgccgc
tcagtcagcgacaacgacatccgcaaatacgagatgttcgcacagacattacagcagagc
agaggcttcggcagcttccggttccccactagctctgcgccaggcgctgggcccagccag
ggctctgctggtggcagcggtggtacagtcttcaatgaggacaacgacgacgacctctat
ggttaa
DBGET
integrated database retrieval system
