Oncorhynchus tshawytscha (Chinook salmon): 112230985
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Entry
112230985 CDS
T05605
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 13-like isoform X1
KO
K15164
mediator of RNA polymerase II transcription subunit 13
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otw03021
]
112230985
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
CDK-module
112230985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Med13_C
MID_MedPIWI
Med13_N
Motif
Other DBs
NCBI-GeneID:
112230985
NCBI-ProteinID:
XP_024253215
LinkDB
All DBs
Position
LG33:21901704..22020056
Genome browser
AA seq
2153 aa
AA seq
DB search
MTTAANWVANGASLEDCHSNLFSLAELTGIKWRCYSFRGGGEYGPVISAPAQDDPVLRSF
IRCVQANLLCVWRRKVKPDAKELWIFWWGDEPNLSDVIHHELEVAEEGLWECGLSYECRT
LLFKAIHNLLERCLMDKDFVRIGKWFVKPYELEEKHMGTSEHLSCSFTFFLHGESNVCTS
VEVAQHQPAYHITDDHTRLAQISSAPVQVILSPYGLAGSLTGQAYKMSDPAVRKLMEEWS
YFYPMVLQRHREGGAGTGGMGAEREGTDRPYDPHSHVAVEVIVGGVRMIYPAAFVLVAQG
DLPVEEPPPAPGAQGGSRDPSHCSIPLTPPTSPEQPCSADSGFVTTVSSVLPAQESAMGV
TNSPKHSGKKLTNQVVHQAWKECYLNQLQHKCSGPSSVTPKKEAPNGLPTWDFTDPEERA
PCSCSRLKQQKQQQQTNTSSANPPSGANPTPSSGPALPPPSLPKHKATDKPEKADKQPKR
AAAMTPFHHRLSVGQEACLEQDSSGGSQLGLVSLDPPLDPMPSCKYPKPLSAGRKAPESM
LHSPVSPLPPTLSPHPRGGQDPEVLDTSVGMAPCPDGASAMGGMEPSETALYAAPLGPRE
REAGAGWWRGFRTPRADKAEFRPPELPSDRVEVKTETQATEGVALKRLFMQTQKRFKISE
ECVRAHIQTLGLLHQPGDPGDDPYDFKEGDIEYSFPTSKRLKGQGRDPSKRGPKGEEISN
GALPDGKDAMSIFSSAPKADDDSPQDDDAAAKAQNPSLTRETDLVVLISDLENIFDEDEE
ELRTACPNQHTARVLVSGSEDRREGRVAVPYPSTVADLQRMFPTPPSLEQHPAFSPIMTY
RDTPSQEPPAPSVGSDHPLGPLSSTQLQEYRMEVEEGMASPKPEDIKDFSFVYRVPSVQP
QMGCSIFAPLRTLPSQCLPPLKLPDQCYYRPSWALLPKMEHYSSLPPSHHTPFIRDGYVN
IPSVGDQEYAQLSASALSVGTTGGILPSPSPATPRFSVPTPRTPRTPRGVGTASGQGSVK
QEGTGTELSSPTSTPSTSLPMSSVAEPHTSSPPIPEAHSLYAALLLSDSVLNVFKDRNFD
SCCICACNMNVKGADVGVYIPDSTLEDQYRCMCGFSAIVNRRLAHGTGLFLEDELDIFGR
GSEVGQAAERRLALCRRDPPMGDPRAKRPQDSSPAPSSVMVLLQQQCSQPISSLASMHLP
PSCSCHGRQGALLHSWMADKQWADGSDACVECYNALVQGQQYVDNPAGGKVDPAVVRSSA
LHSWPHTNMLDISMLSSQDVVRMLLSLQPFLQDAIQKKRMGRTWENIQHVQGPLTWQQFH
KMAGRGSYGSEESPEPLPIPTLLLGYYDYYDRNFLALSPLALPFWEKLLLEPYGGQRDVA
FLVLCPNSDTLLAGAQVFFQELSAVYETCRLGKHRPLAKVSRDGLVRVGAVDTETETEKE
RQEEEQIDQWFTGPWAGQQHIDNLRKLKLYARACRRQLGPQLSALSLDSSLFIPPKHQPP
LAPTPSSAQPAPSSSQPPSGPGAPAEGEPAAAPSSGSTPTPTAAASDQPGPAEITQGGAA
EAKTTPNATPPPPSQPAETPESLAERERIGIPTLADSADSHAHPPAIVIYVVDPFLCSGG
SRDSGGGGEEEEGEEVEAGSVWLLGLMRCYTEMLKTLPESMRPALVLQVVPCQYLLQPAS
GESPLYLQHLRSLAFSAYSQCRRLLPTKTHIKSLTGFGPASTLESVLKSPEHPSPLQGYS
PPYILGPTRAKMPEPGELWAEIPPRYNVLFVGYCLSHDQRWILVSCTDQQGELLETCIIN
IDVPNRVRRPKVSARKMGLQKLWDWCVGIIQMTSLPWRIVIGRLGRLGHGELKDWSVLLG
EHSLHSISRQLKEACRMCGISSADSPSILSACLVAMEPQGSIVVMPDAVTMGSVFGRSTA
LNLQTSQLNTPQDASCTHILVFPTSATTQLAASSYPTEDNADDMFDLPFPDELENDIGHD
ILNLHPSPNTSPVPSPGSPSGMGGSSHFQHNRSQGERLLSRENPPEELKQQPLALGYYVS
TAQADSLPHWFWASCPQAQNQCPLFLKASLHHHISIATAQSDEPTQTSSDKTAKRTPHPL
DSKTTSDVLRFVLEQYNALSWLTCNPATQDRRSCLPVHLAVLTQMYNAILNML
NT seq
6462 nt
NT seq
+upstream
nt +downstream
nt
atgactacagcagcgaattgggtggctaacggggcaagccttgaagactgccactccaac
ctcttctctctggcggagctgacgggcatcaaatggcggtgctacagcttccgcggcggt
ggcgagtacggaccggtgatctcagcgccggcacaggatgacccggtgctgcgcagcttc
atacgctgtgtgcaggccaacctgctgtgtgtgtggcgccgcaaagtcaagcctgacgcc
aaggagctgtggatcttctggtggggcgatgagcccaacctctccgacgtcatccatcac
gagctggaagtggctgaggagggactatgggagtgtgggctgtcatatgaatgccggacc
ctcctgttcaaggccattcacaacctgctggagaggtgtctgatggacaaggactttgtg
cggattgggaagtggtttgtcaagccatacgagctggaggagaagcatatgggcaccagt
gagcacctgtcgtgctccttcaccttcttcctgcatggggagagtaacgtgtgcaccagt
gtagaagtcgcccagcaccagcctgcctaccacatcactgacgaccacacccgcctggcc
cagatctcctcagcccctgtacaagtgatcctgagtccgtacggtctggcaggctccctg
actggccaagcctataagatgagtgacccagctgtaagaaaactgatggaggagtggagc
tacttctaccccatggtgcttcagcgccacagagaagggggcgcaggcacggggggcatg
ggcgccgagagggagggcactgaccgaccatatgacccacacagccatgtggccgttgag
gtcattgtaggtggtgtgaggatgatctacccagcagcctttgtgctggttgcccaaggc
gacctgcctgtggaggagcccccacctgcaccgggagcccaggggggcagcagagaccca
tctcactgcagcattcccctcacaccccccacttcacctgaacagccctgctcagcggac
agtggctttgtgacaacggtgtccagcgtcctccctgcccaggagagtgccatgggggtc
accaacagcccaaagcattctgggaagaaactgaccaatcaggtggtgcatcaggcgtgg
aaggagtgttatcttaaccaactgcaacacaaatgcagtgggcccagtagtgtgacgcca
aagaaggaggcgccaaatgggttgcccacctgggacttcaccgacccagaggagagggca
ccatgcagctgctccaggttaaagcagcagaaacagcagcagcagaccaacacctcctct
gccaaccctccgtctggtgccaaccccaccccctcctctggcccggccctcccccctccc
tccctgcccaagcacaaggccacggacaaacccgagaaagccgacaaacagccgaagaga
gccgccgccatgacccccttccaccaccgcctctctgtgggccaggaggcctgcctggaa
caagactcatctggagggtcccagctcggcctagtcagcctggaccctcccctggatccc
atgcccagctgcaagtaccccaagcccctctccgccggcagaaaagctccagagtccatg
ctccactcccctgtctccccattaccccccacgctcagcccccatccacgggggggacag
gaccctgaggtactggacacctctgtgggcatggccccctgtccggatggggcatcagcg
atgggggggatggaacccagtgagacggctctgtatgcagcccctctggggcccagggag
agggaggctggggcaggctggtggaggggcttcaggactcccagggctgataaggctgag
ttcaggcctccagagctccccagtgacagagtggaagtaaagacagagacgcaggccact
gagggagttgcactgaagagactattcatgcagacacagaagcgcttcaagatctcggag
gagtgtgttagggcccacatccagaccctgggtctcctgcatcagcctggggaccccggg
gatgacccctatgacttcaaggagggagacatcgagtacagcttccccacctccaagaga
ctgaagggccagggcagagaccccagcaaaagaggccccaaaggagaggagatcagcaac
ggtgcactgcctgatgggaaagacgccatgtccatctttagctctgctcccaaagctgat
gatgactcaccgcaggacgatgatgcggcggccaaagcccaaaacccttctctaaccagg
gagactgatctggtggtcctcatctcagacctggagaacatcttcgacgaggatgaggag
gaacttaggactgcttgccccaaccagcacacagccagggtcctggtatcaggaagtgaa
gatcggagggaagggagggtggctgtgccctatccttcaacagtagcagacctccagcgg
atgtttcccacacccccttccctggagcagcacccggccttctcccccatcatgacatac
cgcgacacccccagccaggagcccccagccccctcggtgggctccgaccaccccctgggc
cccctgtcctccacccagctccaggagtaccggatggaggtggaagagggcatggccagt
cccaaacctgaggacatcaaggacttctcatttgtgtaccgtgtcccctccgtccagcca
cagatgggctgctccatatttgctccgctgcggaccctccccagccagtgtctgcccccc
ctcaagttgcctgaccagtgttactaccggccttcctgggccctgttgcccaagatggag
cactactcctccctgccgccctctcatcacaccccattcatcagagatggatatgtcaac
atccccagtgttggggaccaggagtatgcccagttgagtgccagcgctctgtccgtgggc
accaccgggggcatcctcccctcaccctcccctgccaccccccgcttttctgtccccacc
cctcgtaccccccgcacccccagaggcgttggcacggccagcgggcagggctcggtgaag
caggagggcaccgggacagagctgagctcccctacctccacgccttccactagcctgcct
atgagctccgtagctgagccccatacgtccagccccccaatacccgaggcccacagcctg
tacgccgccctgcttctctctgactcagtcctcaatgtcttcaaagaccgcaactttgac
agctgctgcatctgcgcctgcaacatgaatgtgaagggcgccgacgtgggcgtgtacatc
cccgactccacgctcgaggaccagtaccgctgcatgtgcggcttcagcgccatcgtcaac
cgccggctggcccacggcacgggcctcttcctggaggacgagctggacatcttcgggagg
ggctcagaggtgggccaggcagctgagaggagactggcgctctgccgcagagacccaccc
atgggagacccccgggccaagcgcccccaggactcctcccctgccccttcctctgttatg
gtgctcctccagcagcagtgctcccagcccatctcctccctggcctccatgcacctccct
ccttcctgctcctgccacggccgccagggggccctgctccatagctggatggctgacaag
cagtgggcggatggcagtgatgcgtgtgtggagtgttacaacgcgctggtacagggacag
cagtatgtggataaccccgccggagggaaagtagatccggctgttgtgaggagcagcgct
ctacattcctggcctcacaccaatatgctggacatcagtatgctgtcatcccaggacgtg
gtgcgtatgctgctgtcgctgcagcccttcctccaggacgccatccagaagaaacggatg
ggccggacctgggagaacatccagcacgtacaaggaccgctcacatggcaacagttccac
aagatggctggacggggctcctacgggtccgaggagtcgccagagcctctgcctattccc
accctgttgttgggctactacgactactatgaccgtaacttcctggcgctgtcgcccctg
gcgctgcccttctgggagaagctgctgttggaaccgtacgggggacagagagacgtggcc
ttcctggtgctctgccccaactctgacaccctgctggctggggcacaggtcttcttccag
gagctcagcgctgtctacgagacatgccggttggggaaacacagacccctggccaaggtg
tccagagatggcctggtgcgtgtgggggcagtggacacagagacagaaacagagaaggag
aggcaggaggaggagcagatagaccagtggttcacagggccctgggctggacagcaacac
atcgacaacctcagaaaacttaaactctatgcccgagcctgcagaaggcagctaggtcca
cagttgtctgccctgtctttggacagtagtctgtttataccccccaagcatcagcctccc
ttagcccccacgccctcatcagcccagcctgccccctcctccagccagcccccctctggc
cccggggcccctgctgagggagagccagcggcagcccctagctcaggaagcacccctacc
cccacggcagcagcctcggaccaaccaggcccagcagagattacccaaggaggggccgct
gaggccaagactacccccaatgccacaccacccccacccagccagccagcagagacccct
gagagtttggcagagcgggagcgaatcggcattcccacgctggcggactcagccgatagc
cacgcccaccccccggccatcgtgatctatgtggtggaccccttcctctgctcaggcgga
tcgagggatagtggaggaggtggagaggaggaggagggagaggaggtggaggcgggcagt
gtgtggttactagggctaatgcgttgctacacagagatgctaaagacattgccagagagc
atgagaccagctctggtgttacaggtggtgccttgtcagtacctgctccagccagccagt
ggtgagagccctctgtacctgcagcacctgcgctccctggccttctcagcctactctcag
tgcagacgcctcctacccacaaagacacacatcaagtctctgaccggtttcggccccgcc
tccaccctagaatctgtgcttaagagcccagagcaccccagccctctacagggctactct
cccccgtacattctgggtcctacccgtgccaagatgccggagccaggggagttgtgggca
gagatccctcccaggtacaacgtgctgtttgtgggctactgcctgtcccacgaccagcgc
tggatcctggtctcctgcaccgaccaacagggagagctactggagacctgcatcatcaac
atcgacgtgcccaacagagtgcggcggcccaaggtctcggccaggaagatggggctgcag
aagttatgggactggtgtgtcggcatcatccagatgacctcactgccctggaggatcgtg
attggtcggctgggcagactaggacacggggaactgaaagactggagcgttctcctgggg
gagcactccctccactccatcagtcgccagctgaaggaggcgtgtcgtatgtgcggcatc
tcctccgcggactccccctccatcctcagtgcctgcctggttgccatggagccccagggc
tccatcgtggtgatgccagatgcggttacaatgggctcggtgtttggtcgcagcacagcc
ctcaacctgcagacgtcccagctgaacacccctcaggatgcttcctgtacccacatcctg
gtattccccacctccgccaccacccagctggccgccagctcctaccccacagaggacaac
gccgatgacatgttcgacctgcctttccctgatgagctggagaatgacataggacatgac
attctcaaccttcacccttcccccaacacctccccagtaccctcccctggctccccctct
ggcatggggggaagctcacatttccagcataacaggagtcagggagagaggcttctgtcc
agggagaaccctccggaggagctgaagcagcagcctctagcccttggatactacgtctcc
actgcccaggccgacagcctgcctcactggttctgggcctcctgccctcaggctcagaac
cagtgtccactcttcctcaaggcatcgctacaccaccacatctccatcgccacagcccaa
tcagacgagcccactcagacgagctcagacaagaccgctaagaggacgcctcaccctctg
gactccaagaccacctctgacgtgctcaggtttgtgttggagcagtacaacgccctctcg
tggctgacgtgtaaccctgccacccaggaccgccgctcctgcctgcccgtccacctggcc
gtgctcacacagatgtacaatgccatcctcaacatgctctag
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