Oncorhynchus tshawytscha (Chinook salmon): 112230990
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Entry
112230990 CDS
T05605
Name
(RefSeq) exosome complex component RRP4
KO
K03679
exosome complex component RRP4
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112230990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112230990
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
112230990
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
112230990
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
ECR1_N
KH_6
ECR1_N_2
EXOSC1
RRP40_S1
Motif
Other DBs
NCBI-GeneID:
112230990
NCBI-ProteinID:
XP_024253222
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Position
LG33:complement(22508595..22515503)
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AA seq
295 aa
AA seq
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MAADMRLPTFRKQVSLSPSLSALDGKDLVVPGDVITSDTGFMRGHGTYMDEEKLTASVAG
EVERVNKLVCVRPLRTRFNGEVGDVVVGRITEVQQKRWKVETNSRLDSVLLLSSVNLPGG
ELRRRSAEDELTMRDYLQEGDLISAEVQSVFSDGALSLHTRSLKYGKLGQGVLVQLSPSL
IKRQKTHFHNLPCGASIILGNNGFVWLYPAPGQQDEEAGGYYTSLEPVSLSDREVISRLR
NCLLALGAHKVLLYDTSVLYCYESSLPHQIKDILKPEVMEEIVMVTRQKLVEQEG
NT seq
888 nt
NT seq
+upstream
nt +downstream
nt
atggctgcggacatgagattaccaacttttcggaaacaagtatcgttatcaccctctctg
tctgctttggatgggaaagatctagttgtgcccggtgatgtgattacatcagatacaggg
tttatgaggggtcatgggacttacatggatgaagaaaaactaacagcctctgtggcagga
gaggtggagagggtgaataagctcgtctgtgtacggccgctcaggaccaggttcaatggg
gaggttggagatgtggtggtcggaaggatcacagaggtgcaacagaagcgctggaaggtg
gagaccaactccagactggactctgtgttgttgctgtcttctgtcaatctgcccggagga
gagctgaggagacggtcagcagaagatgagctcaccatgagagactaccttcaggagggg
gacctcatcagtgcagaggtacagtctgttttctcggatggagcactctctcttcacacc
cgcagtttaaagtacggaaagctggggcaaggagttcttgtgcagctatctccctctctc
atcaagagacagaaaacccacttccacaacctgccgtgtggggcctccatcatcctgggc
aacaatggctttgtgtggctgtaccccgccccaggacagcaggacgaggaggctggagga
tactacaccagtctggagccggtctctctctctgatcgggaggtgatctcgcggttaagg
aactgcttgctggccttgggggcacacaaggtgctgctgtatgacaccagtgtgctctac
tgttacgagtcatcactcccacaccagatcaaggatatcttaaaaccggaggtgatggag
gagattgtgatggtgacgcgtcagaaactggtggaacaggagggttag
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