Oncorhynchus tshawytscha (Chinook salmon): 112231051
Help
Entry
112231051 CDS
T05605
Name
(RefSeq) retinoic acid receptor RXR-alpha-A isoform X2
KO
K08524
retinoid X receptor alpha
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03320
PPAR signaling pathway
otw04148
Efferocytosis
otw04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
112231051
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
112231051
03320 PPAR signaling pathway
112231051
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112231051
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
otw03310
]
112231051
Transcription factors [BR:
otw03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
112231051
Nuclear receptors [BR:
otw03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
112231051
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
Nuc_recep-AF1
zf-C4
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
112231051
NCBI-ProteinID:
XP_024253341
LinkDB
All DBs
Position
LG33:26429409..26590476
Genome browser
AA seq
540 aa
AA seq
DB search
METKPFMSLESTILPMGWFLKPQCSLAPPPQRGRSGEACSCFTGMCHLHHPRISTGNTQR
HLHIPSPSSPSWQTPHLGRHLYQINSSGQVTSSPLSSPTSHRGMHPSLLNPSSMGPSGSL
HSPISTLSSPMNGLGSPFSVINSPMGPHSMSSPGMGYGPSVSPQLNSQMNSVSSSEDIKP
PLGLNGVMKVPAQPSPGCMPLSLTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDL
TYTCRDNKDCLIDKRQRNRCQYCRYQKCLACGMKREVLLHTAVQEERQRAKERSENEVES
TSGVNEDMPVEKVLEAELAVEPKTETYTETNLGMPSNSPNDPVTNICQAADKQLFTLVEW
AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGV
GAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPGEVEALREKVYASLEA
YCKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQMT
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccaaacctttcatgtcattggaatctacaatcctgcctatgggatggttccta
aagccccagtgctcgctggctccgccccctcagcgaggacgctcgggggaggcctgctcc
tgtttcaccggcatgtgtcacctccaccacccccggatatctacaggtaacactcaacgc
catctccacatcccctcgccatcttccccgtcatggcagactccgcacctgggaagacac
ctgtatcaaataaattcatcaggtcaggtgacctcatctccactgagctctcccacgtca
caccggggcatgcacccatccctgctcaacccgtcctccatggggccctcaggctccttg
cactctcccatcagcaccctgagttctcccatgaacggcctgggctcgcccttttctgtc
atcaactcccccatgggcccacactccatgtcctcgcccggcatgggctacggccccagt
gtcagcccccagctgaactcccagatgaactcggtcagcagctcggaggacatcaaaccc
ccgctgggtctcaacggggtgatgaaggtgcccgcccagccctcgccagggtgcatgcct
ctctccctcaccaaacacatctgtgccatctgcggagaccgctcctcaggtaaacattat
ggagtgtacagctgtgagggctgtaaaggcttcttcaagaggacagtgcggaaggacctg
acctacacctgccgggacaacaaggactgtctgatcgacaagcgccagcgcaaccgctgc
cagtactgtcgctaccagaagtgtctggcctgtggaatgaagagagaagttttgttacac
acagccgtccaggaggagcgccagcgggccaaagagcgcagcgagaacgaggtggagtcc
accagcggcgtcaacgaggacatgcccgtggagaaggtcctggaggccgagctcgctgtg
gaacccaagaccgagacctacaccgagaccaacctgggcatgccatccaactcgcccaac
gacccggtgactaacatctgccaagcagccgacaagcagctctttacactggtggagtgg
gccaagaggatcccccacttctctgagctgcccctggatgaccaggtcatcctcctacga
gcagggtggaatgagctcctcatcgcatccttctcacaccgttcgatagcggtgaaagat
gggatcctcctggcaacagggctacacgtccatcgtaacagcgcccacagtgctggagtg
ggagccatctttgacagagtgctcacagaactggtgtccaagatgagagacatgcagatg
gataagacagagctggggtgccttcgagccattgtcctcttcaacccagattctaaaggc
ttgtcaaacccaggcgaggtggaggctttgagagagaaggtctacgcctctctggaggcc
tactgcaaacagaaatacccagatcagcctggcaggtttgccaagctgttgctgcggtta
ccagccctgcgttccattggtctgaagtgtctggagcacctgttctttttcaagctcatc
ggggacacgcccatcgacaccttcctcatggagatgctagaggcgccccaccaaatgaca
taa
DBGET
integrated database retrieval system
