Oncorhynchus tshawytscha (Chinook salmon): 112231145
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Entry
112231145 CDS
T05605
Name
(RefSeq) cysteine protease ATG4A isoform X1
KO
K08342
cysteine protease ATG4 [EC:3.4.22.-]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04136
Autophagy - other
otw04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
112231145
04136 Autophagy - other
112231145
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
otw01002
]
112231145
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112231145
03029 Mitochondrial biogenesis [BR:
otw03029
]
112231145
Peptidases and inhibitors [BR:
otw01002
]
Cysteine peptidases
Family C54: Aut2 peptidase family
112231145
Membrane trafficking [BR:
otw04131
]
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
112231145
Mitochondrial biogenesis [BR:
otw03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
112231145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C54
Copper-fist
ATG4_LIR
Motif
Other DBs
NCBI-GeneID:
112231145
NCBI-ProteinID:
XP_024253488
LinkDB
All DBs
Position
LG33:30817815..30829492
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AA seq
411 aa
AA seq
DB search
MEAVLAKYENQINVFSEFLEDLPDTDEPVWVLGECYNAKTGKTELLSDVHSRLWFTYRKK
FSPIGGTGPSSDAGWGCMLRCGQMILAQALVCSQLGRAWRWRAQGGQPEKYHRILHCFLD
RKDSCYSIHQMAQMGVGEGKSVGEWYGPNTVAQVLKKLALFDDWNSLAVYVSMDNTVVIE
DIKKQCRQASSASRLRPRPCGWQEPFTSRETPEQACSHTDGHRATTCPHSQSHSDWRPLL
LVIPLRMGINHINPVYIQALKECFKMPQSCGVLGGKPNLAYYFIGFVGEELIYLDPHTTQ
SAVEAGSGVDDQSYHCLRSPRRMKITNLDPSVALGFFCKSEDDFDSWCNLVQQEIQMKRN
LRMFELVENHPPHWPPFVPPTKPEVQTTGAEFIESTDKLFESEEEFEILNV
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atggaggcagtattagcaaagtatgaaaaccagataaacgtgttttcggagttccttgaa
gacttgcctgacacagatgaacctgtgtgggttttaggagagtgttacaatgctaaaaca
ggaaagacggagctactatcagacgtccactcgcggctatggtttacctacaggaaaaaa
ttctctcccatagggggaacaggcccctcttcagatgcaggctggggatgcatgctacgc
tgtgggcagatgatccttgcacaggccctggtatgctcacagctgggacgagcctggcgt
tggagggcacagggaggacagccggagaagtaccatcgtatcctccactgtttcctggat
aggaaagacagctgttactccatacaccaaatggctcagatgggagttggtgaaggaaag
tctgtaggagagtggtatggcccaaacacagttgcacaagtgctcaagaaacttgcgcta
tttgatgactggaattctcttgctgtatatgtgtcaatggacaacactgtggtgatcgag
gacatcaagaagcagtgtcgccaggcaagcagtgcgagcagattgcggccgagaccctgt
ggctggcaggaacccttcacctctagggaaacaccagaacaagcctgttctcacacggat
gggcatagagccacgacttgtccacattcccagtcccattctgactggagacccctactg
ctggtcataccactccgcatgggaataaaccacatcaaccctgtctacatccaggccctc
aaggagtgttttaaaatgccacagtcctgtggtgtgctgggaggaaagcccaatctggcc
tattacttcatcggatttgtaggagaggagctgatctacctggacccccacaccacccag
tcagccgtggaggctggcagtggagtggacgaccagagctaccactgtctgaggagccca
cgccgcatgaagatcaccaacctggacccctctgtggccctgggatttttttgtaagagt
gaagatgactttgacagttggtgtaacctggtccagcaggagattcagatgaagaggaac
ctgaggatgtttgagctggtggagaatcacccgccccactggccccccttcgttcctccc
accaaaccagaggtccagaccacaggggcagagttcatcgaatcgaccgacaagctgttt
gagtctgaagaggagtttgagatcctcaacgtgtga
DBGET
integrated database retrieval system
