Oncorhynchus tshawytscha (Chinook salmon): 112231197
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Entry
112231197 CDS
T05605
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112231197
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112231197
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
112231197
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Fip1
TSX
Motif
Other DBs
NCBI-GeneID:
112231197
NCBI-ProteinID:
XP_024253586
UniProt:
A0A8C8IFS1
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Position
LG33:32784292..32796676
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AA seq
535 aa
AA seq
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MATELTISESAVPLSEPHQVEDEEHWLYGGENTKKQNAPEGLPGPGDSLQLTSMGNTLQL
TSMGNTEEKDAASQEAKGTEGEEEEDSDSDDDDDVKVTIGNIKTGAPSYMGTGMNLSLKP
ARCYASAAAIKLQPKGIDIETLGAFNGAPVVEVEMDIFEDKPWRKPGADLSDYFNYGFNE
ESWKGYCERQRRLQLGLEPSAPLSFENKITVQQGRATTLEKDTEPSSVKPDYKPDFPPAS
VLALAANRLKAGPPPNRKLGGTIDVIGGQTGAIRRVEGRRREMQEQNPIQVLGDHGNKVQ
PLVPPAGPPLPLPMGMPPPHFLHPPPPVSAMPPPLHPPGMPPPSITGLFLPPLAPPPTLM
MPPVDSSRAPLPFGYNSGESSFISYPPVSSSHMPWGSVLEKGGEDRGRGHWEYQGSHRER
DRDQERGHTPTTTEYNEDDRYHYYSHDRESEREFEHSYLHVHDSSGGRSREREEHQRDRR
HRDKEESGKHKSSKRKQHDDEGEGHRRHKHKKSKRSKEDKDVPEDMLGRGEEQKD
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atggctactgagttgaccatttcagaatcagcagtcccgttgagtgagccccatcaggtt
gaagacgaagagcattggctgtatgggggggaaaacaccaagaaacaaaatgcccccgag
ggtttgcctgggcctggtgactcccttcagctgacttcaatgggcaatacccttcagctg
acttcaatgggcaataccgaagagaaggatgctgcatcacaggaagccaaaggtactgaa
ggtgaagaggaggaggacagtgacagtgatgacgatgatgacgtcaaggtcaccattggt
aacatcaaaactggtgcaccttcctacatgggaacgggcatgaacctgagcttgaaacca
gctcgttgctatgcctcagcagcagccattaagctgcagcccaaaggaatagatatagag
acactaggggccttcaatggtgcaccagttgtggaggtggaaatggacatctttgaggac
aaaccatggagaaagccaggtgccgacctctcagactacttcaactatggttttaatgag
gaatcgtggaagggatactgtgagagacagcgcagactacagcttggcctggagcccagt
gctcctctcagttttgaaaacaagataacagttcagcagggaagggcaaccactttagaa
aaggatacagaaccgtcttccgtcaagcctgattacaaaccagactttccccctgcttca
gtcctggccctcgctgccaacagactgaaggcaggacccccacctaacaggaaattgggt
ggaactattgatgtgattggtggacagacaggagccattcgccgggttgaaggccgaagg
agggaaatgcaggaacagaatcctatccaggtgctcggagaccatggtaacaaggtacaa
cccttggttccaccagcaggacctccccttcctcttccaatgggtatgcccccaccacac
ttcctgcatcctcctccaccagtatctgctatgcccccacctcttcaccccccaggtatg
cccccaccttccattacaggcctgttcctacctccccttgctcctccccctaccttgatg
atgccacctgtggatagcagtagagcccctcttccttttggatacaacagtggagagtca
agcttcattagctaccctccagtctcatcatcacacatgccttggggctctgtgctggag
aaagggggggaagacagaggacgagggcattgggagtaccaaggaagtcatagagaaaga
gacagagatcaagagagaggtcatactccaaccaccaccgaatataatgaggatgaccgt
taccactactacagccatgatcgagagagtgagcgagaatttgagcacagttaccttcat
gttcacgacagcagcggtgggcgtagcagggagagggaggagcatcagcgagacagacgc
catcgtgacaaggaggagagtggtaaacacaagtcttccaaacgcaagcagcatgatgat
gagggggaggggcatcgcagacacaagcacaagaaaagcaaacgcagcaaagaggacaag
gatgtcccagaggatatgttggggcgtggggaagagcagaaggactga
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