Oncorhynchus tshawytscha (Chinook salmon): 112231253
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Entry
112231253 CDS
T05605
Symbol
sympk
Name
(RefSeq) symplekin isoform X1
KO
K06100
symplekin
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03015
mRNA surveillance pathway
otw04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112231253 (sympk)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
112231253 (sympk)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otw03021
]
112231253 (sympk)
03019 Messenger RNA biogenesis [BR:
otw03019
]
112231253 (sympk)
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
112231253 (sympk)
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
112231253 (sympk)
U7-dependent histone pre-mRNA processing factors
112231253 (sympk)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
PDS5
Adaptin_N
Cnd1
Motif
Other DBs
NCBI-GeneID:
112231253
NCBI-ProteinID:
XP_024253669
LinkDB
All DBs
Position
LG33:33821643..33833063
Genome browser
AA seq
1267 aa
AA seq
DB search
MDNKGSNKKMASNNGESAGVRTSVASQFFNEDEDTAIVDMTTSEKVVDLLNQAALIATDS
KLTVLKQVQELIINKDPSLLDNFLDEIIAFQTDKSMEVRKFVIGFIEEACKRDNELLLKL
IANLNMLLKDESVNVVKKAILTLTQLYKVALQWFVRSKTMSDMQEACWDMVTQMKEEVLA
MLEVDNDGVRTHAIKFTESLIITLSPRTSDSDTPKRQEGDISLDKISKDHAYIRYDTLCG
EGKSALEQLLKFMVHPAISSINLTTALGSLATLARQRPMFMSEVVQAYETLHANLPPTLA
KSQVSSVRKNLKLHLMAVLKHPCSLEFQGQISTLLLDLGMSQNEITRHTPAPREPRKRPR
HEPYTEGKKLKIEPALIEDDEDKEEPAPPSISKPSSVPVVQSAIDLTAEFLRPLLSPENV
ANLVLISMVYLPDVMPASFQATYTPVESAGTDAQIKHLARMMATQMTAAGVGPGLEQCKA
RDEKAGKEEGMDEGIGESSKDLLIKRKVPVMGQAISVVGGGYGDKSQTETGEAPQVKRLP
EPILPSTQIKTPGTSGKRKVFRLADVIQPLTDTQLEKLTNMAVKRILHSEKAIAQSGMAH
VRVKLLSRLVTQFEGMMKDDVLEFILEDIRTRSDLAFSLLYQEYNTYLSQQPTGLLDSYD
HCLFTLLSGLQEKPEQRDGLFTKIVLEAPLITESALEVIRRYCEDESRVYLGMTTLKELI
VKRPSRQFQYLHVLLDLSSHEKEKVRSNALSFIKRMYEKDQLRDYIEKFALNYMQLLVHP
NPPSLLFGADKDTEVASPWTEDTVRQCLYLYLSLLPLNHRLVHELASVYTEAIADIKRSV
LRVIEQPIRGMGMKSPQLLLLVENCPKGAETLVTRCLHILTDKVPPSPELVERVRDLYHK
RVPDVRFLIPVINGLEKKEVTQALPKLIKLNPIVVKEVFNRLLGTQHSEGSSSMSPLTPG
ELLISLHNVDSTKCDMKSIIKATNLCFGEKNVYTSEVLAVVMQQLMEQSPLPILLMRTVI
QSLSMYPRLGGFVMNILSRLIVKQVWKYPKVWEGFVKCCQRTKPQSYSVLLQLPPAQLTS
VFERCPEMREPLLQHVHSFTPHQQAHIPASIMTVLEANSKQPEPEAMQPVVLERQVETPI
ATIAANVTITPVATFTPVATPPVRAEPIPVPLRDPEPALQQHLPSKKEEEEPMEEGETAP
TCQEETADTTLQVDLPVVEENPTPDPIETVEEPMEEARTEPSDVTDQLKDVTEEGTTEPE
TGTGDAE
NT seq
3804 nt
NT seq
+upstream
nt +downstream
nt
atggataataaaggatctaataagaagatggcctcaaataacggagaaagtgctggtgtg
aggaccagtgtggcatcacagtttttcaatgaagacgaggacacggctattgtcgatatg
accaccagtgaaaaggttgttgatctcctgaaccaagcagctcttattgctacagacagc
aaactcacggttctcaaacaggtccaggaattgatcatcaacaaggacccctctttactt
gacaatttcttagatgagatcatagcctttcagaccgataagtcaatggaagtaagaaag
tttgtcattggcttcattgaggaagcatgtaagagggacaacgagctcctgcttaaactg
attgccaacctgaacatgctgctgaaggacgaaagtgtcaatgtggtgaagaaggctatc
ctcacactcactcagctctacaaagtggcgctgcagtggtttgtgcgttccaagaccatg
tcagacatgcaggaagcatgctgggacatggtgactcagatgaaggaggaagttctggct
atgctggaagttgacaatgatggagtccgcactcatgctatcaagttcacagagtctctc
atcatcactctttcaccgaggacgtcagactctgacactcccaagcgccaagagggagac
atcagcctggataaaatctccaaagaccatgcctatatccgctacgataccctgtgtggg
gagggcaagtctgcgctggagcagcttctgaagttcatggtccaccctgctatctccagc
atcaacctgaccacagccctgggttccctggccacactggcccgacagaggcctatgttt
atgtctgaagtggtccaggcttatgagactctgcatgccaacctacccccaacactggca
aagtctcaggtgagcagtgtacgcaagaatctaaagttacacctgatggcagtgctcaag
cacccctgcagcctggagttccagggacaaatcagcactctgctcctagacctggggatg
tcccagaatgaaataacccgtcacacaccagccccacgtgaaccgcgcaaaaggccccgc
catgagccatacacagagggcaaaaagctcaagattgagcccgctcttatagaagatgat
gaagataaagaagagccagccccaccttccatctccaagccctcctctgtgccagtagtc
cagtcagccatcgacctcactgcagagttcttgcgccccctgctctccccagagaacgtg
gccaatctggttctaatcagcatggtgtatttgcctgatgtcatgccagcgtccttccag
gccacatacacaccagtggagtctgcaggaacagatgcccaaatcaaacacttggccaga
atgatggccactcagatgacagcagcgggagttggaccaggactggagcagtgcaaagca
cgagatgagaaagctggaaaggaggagggcatggatgaaggcataggggagtcctccaaa
gacctgctcatcaagcgcaaagtaccagttatgggtcaagccatctctgtggttggagga
ggctatggagataagagccaaactgaaacgggggaagccccccaggtcaagaggctgcct
gagcccatcctcccctccacacagatcaaaacacctgggacaagtgggaagaggaaagtg
ttcagattagctgatgtgatccagcctttgacagacacccagcttgaaaagttgaccaac
atggctgtcaagcgcatcctgcactcagaaaaagctatagcacagagtgggatggcccat
gtgcgcgtgaagctgctgtccagacttgtgactcagtttgaggggatgatgaaggatgat
gtgctggagttcattctggaggacattaggaccaggagcgacctggccttctctcttctc
taccaggagtataacacatacctcagtcagcagcccactggcttgttggacagctacgac
cactgcctcttcactctactgtccggcctgcaggagaagcccgagcagagggatgggctt
ttcacaaagattgtgctggaggctccgttaattacagaatctgctttggaagtaatacga
cggtactgtgaagatgagtcgcgggtgtacctcggcatgactactctaaaagagctgatt
gtaaaacggccctcaaggcagttccagtatctccatgtgcttctggatctcagctcacat
gaaaaggagaaggtgcgctccaatgccctgtccttcataaagcggatgtatgagaaagac
cagctgagggattatattgagaagtttgccctgaactacatgcagctccttgtacaccct
aaccctccgtcgttactttttggggctgacaaggatacagaggtggcctccccctggaca
gaggacacagtgaggcagtgcctgtacctctacctgtcccttctgcctctcaaccaccgc
ctggttcatgagctggcctctgtctacactgaagccattgccgacatcaagcgcagtgtg
cttcgagtgatagagcagccaatccgtggaatggggatgaagtctccacagcttctgctg
ttggttgaaaactgtcctaaaggagcagagactctggtcactcgctgcctgcacattctc
actgataaagtgcctccgtcaccagagttggtggagagagtgagggacctgtatcacaaa
cgagtgcccgatgttcgtttcctaattcctgtcatcaacggcctggaaaagaaagaggtg
acccaggctcttcccaagcttatcaagctcaaccccattgtggtgaaggaagtcttcaac
cgtctcctgggcacccagcatagcgagggtagttcctcaatgtctcctctcacccctggc
gagcttctaatttctttacacaatgttgactcaacaaagtgtgacatgaagtccatcata
aaagccaccaacctgtgttttggggagaagaatgtgtacacgtcagaggtcctggctgtg
gtaatgcagcagctgatggagcagagtcctctccccattctgctgatgagaacagttatc
cagtccctcagcatgtacccccgcctgggaggcttcgttatgaacatcctgtcccgactc
attgtcaagcaggtgtggaagtatcctaaggtgtgggagggctttgtgaagtgctgccag
aggaccaagccgcagtcctacagcgtgctgctgcagctcccaccagcccagcttaccagt
gtgtttgagcgctgcccggagatgagggaacctcttctacagcacgtccactctttcacc
ccccaccagcaagcccacattcctgcctccatcatgacagtcctggaggccaacagcaag
cagccagaaccagaggccatgcagcctgtagtattggagagacaggttgagacacccatt
gcaaccatcgcagccaatgtaaccattacacccgttgcaaccttcacacctgttgcaacc
cctccagtacgggcagaacctattccagtaccgctgagagatccagagccagcactccag
cagcatctgccaagtaaaaaagaggaagaggagcccatggaggaaggagagacggccccc
acttgtcaagaggaaactgcagacaccactttacaggtggatttgccagtagtggaagaa
aaccccactccggatcctatagagaccgtggaggaaccaatggaggaggcacgtactgaa
ccttcagatgtcactgaccaattaaaggatgtcaccgaagaaggtaccacagaacctgag
actggcacaggagatgcagaatga
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integrated database retrieval system
