Oncorhynchus tshawytscha (Chinook salmon): 112231254
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Entry
112231254 CDS
T05605
Symbol
si:dkeyp-117b8.4
Name
(RefSeq) E3 SUMO-protein ligase ZBED1 isoform X1
KO
K24637
zinc finger BED domain-containing protein 1 (E3 SUMO-protein ligase ZBED1) [EC:2.3.2.-]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112231254 (si:dkeyp-117b8.4)
04121 Ubiquitin system [BR:
otw04121
]
112231254 (si:dkeyp-117b8.4)
Transcription factors [BR:
otw03000
]
Eukaryotic type
Zinc finger
Cys2His2 BED
112231254 (si:dkeyp-117b8.4)
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
112231254 (si:dkeyp-117b8.4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-BED
Dimer_Tnp_hAT
zf-C2H2_12
Sgf11
Motif
Other DBs
NCBI-GeneID:
112231254
NCBI-ProteinID:
XP_024253671
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All DBs
Position
LG33:33850367..33854506
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AA seq
909 aa
AA seq
DB search
MEGYKPLKGSLYGSFGFKLDAKGILTDKSIVYCFHCEQSFSYHRSKTSLQYHLRKKHPLV
TKATPSEDVESDSEITVISDNSNMDFRGYPLSSSLGPNLRRRGDRGPPGLVLDRRKSTVW
NYYIQLNEMYVECNICKRQLSFHNSTTTMREHLVRKHNIRDNGPPVLHNTVVGLAPIPAT
SLQPMAQPRFPCNISTTSTTANTFMFQPDLHVVVKEEQQDADLSPEQGTAKRSRITCAPP
DVGGGANANPVCSRDLEPSNSNTGLLYSENNHFGDSSRSGTCIKESNDKRTGFLTDLILE
VVYRDLQPLSVVEERGFRLLLSCLEPQYPVPSPSQLGSLIWHRYDVLKLQLQQCLQSGLA
PRGITLCTEYWRSVAGCEVGASGRVFLTVSAHFIDKDWRLARCVLQTRPMTVIRERACGS
GFTQFGDTLKAVLSDFHLPQSSVFCVVHDTPKTSEARGTVNMGLQKENQIAGPGQLPQDL
PETWVALHCAGEALKLCIQEGLWMEPVRQALSEARRIISHFQHDTPAAAALIHKAEAANK
AGACLALDDPGHWATTIDMCESLLGLKWVVSSVLEEQKAAPNLVDHQWRLLQELVPVLKT
MRIAASFLSEDINVSISALMPCLHGVFRVLRQHIAESSCPVARGVMETMQSGMERQWRLG
EEEALLDSPAVLSSFLDPRFKELRFLSPHARSKLHDKVKELLSAQAQMEAEEISRERDKG
GDKGEEGRERGVTNMRLMNSQSTIVHLQPPSYNQVSPVAKTMYDILLGEDPTERMPEIHQ
QLENYIAEPLCKRSLSPLHWWHSKEHRFPAVARLARTFLAIPTTAVAADRAFAPRETTVA
QRRAILGPQHLDHILFLHQNSDYVEKLMGGSTVHGERGSDKNGAKKTRETLYQSLVSYES
KTWVGGEEL
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atggaaggctataaaccactcaaaggaagtttatatggaagttttggctttaaattggat
gcgaaaggaatcttaacagacaaaagcatagtttactgtttccattgcgaacagagcttt
tcctaccaccgcagcaaaacaagcttgcaataccatttgcgaaaaaaacatcctcttgtc
actaaagctacacctagtgaagatgtagagtccgactcggaaatcacagtgatctctgac
aactctaacatggatttccgagggtacccgttgtccagcagtctgggaccaaatttgagg
agaaggggggatcggggaccaccaggactggttctggatagacgcaagtctacagtttgg
aattactatatccagcttaatgagatgtatgttgagtgtaatatatgcaagagacagttg
tcttttcacaacagcactacgactatgagggagcaccttgtccgcaaacataatatacgt
gacaatggtccacctgtactccataacacagtggtgggcttggccccgattccagctaca
tcacttcagccaatggcccagcccagattcccctgcaacatctccactacatctactact
gccaacacattcatgttccagccagatttgcacgtagttgtaaaagaggagcagcaggat
gctgacttatctcctgaacaagggacggccaaacgttcacgaatcacatgtgctccccca
gatgtaggaggcggtgccaatgccaaccctgtctgcagccgagatttggaaccgtcaaat
tcaaatactggattactatacagtgagaacaaccactttggtgatagcagtcgcagtggc
acttgtatcaaggaatccaatgataagcgaactggcttcctgactgacctaatattagaa
gtggtgtacagggacttgcagccactgtctgtggtggaggagaggggatttcgtcttcta
ttgagctgcttagaaccacagtacccagtgccatctccctctcagctcggcagccttatt
tggcatcgctatgatgttcttaaactgcaactgcagcagtgtcttcagtctggcctggca
ccacgtggcataacactttgcactgaatactggaggtcagtagcaggttgtgaggtggga
gcaagcggccgggtgttcttaactgtaagtgcacattttattgacaaagactggcgcttg
gcccgttgtgtgctgcagacccgtcccatgaccgttatcagagagagggcttgtggaagt
gggttcactcaatttggtgacaccctaaaggcagttctctctgacttccatctcccccag
agctctgttttctgtgttgtgcacgatactcccaagacctcagaggccagaggaactgtg
aatatgggacttcagaaagaaaatcaaattgctggaccaggccaattgcctcaggatctc
ccagaaacctgggtagcattacactgtgcaggggaagccctcaaactctgcatccaggaa
ggactatggatggaacctgtcagacaggctctttctgaggcccgcaggattatttcacat
ttccagcatgacacacctgctgctgccgctctgatccacaaagcagaagctgctaataaa
gccggtgcttgtctggcgctggatgacccagggcactgggcaactactatcgacatgtgt
gaaagtctgctagggctgaaatgggtggtgagctctgttctagaggagcagaaagctgct
ccaaatttagtggaccaccagtggcgtctactccaggagctggtgccagttcttaagacc
atgcgcatcgctgcctcctttttgagtgaggacataaatgtgtccatctccgcccttatg
ccgtgcctgcatggcgtattccgtgtcctaaggcaacacattgcagagagcagctgccct
gtggctcgaggagtcatggagaccatgcagtcaggaatggagcgacagtggagactgggt
gaagaggaggccttactggacagccctgccgtcctctcttcattcctggacccgaggttt
aaggagctgcgcttcctcagcccacatgcacgtagtaagctgcacgacaaggttaaagaa
ctgttatctgctcaagcgcaaatggaggcagaggaaataagcagagagcgtgataaagga
ggtgataagggcgaagagggaagggaaaggggagtgactaatatgagattgatgaactct
cagtcaacaatcgttcatctgcagcccccttcctataatcaagtgagcccagtggccaaa
accatgtacgacatactgctaggagaggatcccactgagcgaatgcctgagatccaccaa
cagctggagaactacattgcagagcctttgtgcaaacgtagcctgtcacctctccactgg
tggcactctaaggagcatcgcttccctgccgtggccagacttgcccgtacatttctggct
attcctactacggctgtggctgcagacagagcttttgctcctagagagactactgttgct
caacgcagggccattctggggccccagcatttggatcatattcttttccttcaccagaac
agtgactatgtggagaaactgatgggagggtctacggtgcatggagaacggggcagtgac
aagaatggagccaagaagacaagagagactctgtatcagtctttagtgtcctatgagagc
aagacttgggtgggaggggaggagttgtga
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