KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112231326
Entry
112231326         CDS       T05605                                 
Name
(RefSeq) nuclear RNA export factor 1
  KO
K14284  nuclear RNA export factor
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03008  Ribosome biogenesis in eukaryotes
otw03013  Nucleocytoplasmic transport
otw03015  mRNA surveillance pathway
otw05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:otw00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    112231326
   03015 mRNA surveillance pathway
    112231326
   03008 Ribosome biogenesis in eukaryotes
    112231326
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    112231326
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:otw03019]
    112231326
   03009 Ribosome biogenesis [BR:otw03009]
    112231326
Messenger RNA biogenesis [BR:otw03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     112231326
   mRNA cycle factors
    Stress granule specific factors
     112231326
Ribosome biogenesis [BR:otw03009]
 Eukaryotic type
  Pre-60S particles
   Export and cytoplasmic maturation factors
    112231326
SSDB
Motif
Pfam: LRR_NXF1-5 NXF_NTF2 Tap-RNA_bind TAP_C NTF2 UBA_8 LRR_8 LRR_9 LRR_4
Other DBs
NCBI-GeneID: 112231326
NCBI-ProteinID: XP_024253787
LinkDB
Position
LG33:complement(35821253..35841703)
AA seq 631 aa
MSTADDSRYNDHDDRVGGQKVRNRKGRGPFRAPMYSDQGPVGPRPRHRGSQRGGGGPGPR
ARFDDEDGDVAMADSNSQDGSSQHRFNPYGRPNRRGDDRFDRGRRGGGGGHRGRGNNKGG
DGGGGGRKNWFKMSVPYGKKYDKDWLITALQNICSMPFTPVHYHVEGNRAEFFIDDSTTA
NALFKVSRKITDKEGYKVTVLMNPCPPPSFLQSELKPADLEHLKQCMAKRFDGSQQALDL
NNIRIDPDLVSQNIDVTLNRKNSMRAVVKIIEENIPELVCLNLSNNKLFRLDDLSELVNK
VPNLKTLNLSHNELKTERELDRIKGLKLVELWLERNPLCDYFKDQASYISEVRERFPRLL
KLDGQDLPPPIVFDVEVTPAALPPCKPSYFCSEEIKTPIVGFLQQYYSVYDSGDRQPLLD
AYHDGATFSLSMPFTMQNPSRCSLGDYHKDSRNLKKLKDPTTRFRLLKHTRLNVVAFLSE
LPKTQHDTASLIVDVNTFTNTLLSFTVTGVFKEVEGKSRDSVRAFCRVFVTVPAGGTSLC
IVNDELFVRNATTEEIRRAFVAPAPTPSSSPVPTLSAPQQEMLSAFSLKSGMNLEWSQKC
LQDNEWDFNRAGQVFTDLKAHGKIPDVAFIK
NT seq 1896 nt   +upstreamnt  +downstreamnt
atgtcaacagccgacgattcacgttacaacgatcacgatgaccgagttggaggacaaaag
gttcgcaaccgtaaaggcagagggcctttcagggcccctatgtatagtgaccaggggcca
gtagggccaagaccaagacatcgtggtagccaaagaggcggcggcggcccgggacccaga
gcgagattcgacgatgaggatggagatgtggcaatggcggacagcaactcccaagatgga
tcctcccaacacagatttaacccttatggaaggccaaatcggcgtggtgacgaccgattt
gaccggggccgcagaggtggtggaggaggtcacaggggtcgtgggaataacaaaggaggg
gatggaggtggaggtggccgcaagaactggttcaagatgtctgtcccctatggaaagaaa
tacgacaaagactggctgataacagcactgcagaatatctgctccatgcccttcacccca
gtacattaccacgtagagggaaaccgagcagagttctttattgatgattccacgactgcg
aatgccttgtttaaggtatcacggaagatcacagacaaagagggctacaaggtgactgta
ctgatgaatccctgtcctccaccctcctttcttcagtctgaactaaagccagctgatctg
gagcacctgaagcaatgcatggctaaacgttttgatggctctcaacaagcgctggacttg
aacaacatccggatagacccagacctggtgtcccagaacattgatgtgactttgaacaga
aagaactccatgcgtgctgttgttaagataattgaggagaatattccagagcttgtttgt
ctgaaccttagcaacaacaagctatttaggctggatgacctgtcagagctggtcaacaag
gttcccaacctgaagacactcaacctttctcataacgagttaaagacagagcgcgagctg
gacaggatcaagggtcttaagctggtggagttatggctggagaggaaccccctttgtgac
tatttcaaggaccaggcttcatacatcagcgaggtgagagagaggttccccaggcttctc
aaactggacggtcaggatctccccccgcccatagtctttgatgtggaggtgactcctgcc
gcccttccaccttgcaagcccagctacttctgctctgaagagatcaagactcccatcgtt
ggcttcctacaacaatactacagtgtgtatgactccggagacagacagcctttgttagat
gcctaccacgatggagcaaccttctccttgagcatgcccttcaccatgcagaacccctcc
aggtgcagtcttggagattaccataaagacagtcgcaacctgaaaaagctcaaggatccc
accacacgattccgcttactgaagcacactcgtctgaatgtggtggctttcctgagcgaa
ctgcccaaaacgcagcatgacactgcatctctaattgtggacgtcaacaccttcaccaac
acattactgtcgttcacggtcactggagtgttcaaagaagttgaaggtaaatcccgtgac
tctgtgagagctttctgtcgggtgtttgtcacagtgccagctggagggacaagtctttgc
atagtgaatgacgagctgtttgtgcgcaatgctacgactgaggagatccgccgggccttt
gtggcacctgcccccaccccatccagcagtcctgtccccaccctctcagccccccagcaa
gagatgctctctgccttctcactcaagtccggcatgaatcttgaatggtcccagaagtgc
ttacaagacaatgagtgggatttcaaccgagcagggcaggtcttcacagacctcaaggct
catggaaagatcccagatgtcgctttcataaagtga

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