Oncorhynchus tshawytscha (Chinook salmon): 112231326
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Entry
112231326 CDS
T05605
Name
(RefSeq) nuclear RNA export factor 1
KO
K14284
nuclear RNA export factor
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03008
Ribosome biogenesis in eukaryotes
otw03013
Nucleocytoplasmic transport
otw03015
mRNA surveillance pathway
otw05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112231326
03015 mRNA surveillance pathway
112231326
03008 Ribosome biogenesis in eukaryotes
112231326
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
112231326
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112231326
03009 Ribosome biogenesis [BR:
otw03009
]
112231326
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
112231326
mRNA cycle factors
Stress granule specific factors
112231326
Ribosome biogenesis [BR:
otw03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
112231326
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
UBA_8
LRR_8
LRR_9
LRR_4
Motif
Other DBs
NCBI-GeneID:
112231326
NCBI-ProteinID:
XP_024253787
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All DBs
Position
LG33:complement(35821253..35841703)
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AA seq
631 aa
AA seq
DB search
MSTADDSRYNDHDDRVGGQKVRNRKGRGPFRAPMYSDQGPVGPRPRHRGSQRGGGGPGPR
ARFDDEDGDVAMADSNSQDGSSQHRFNPYGRPNRRGDDRFDRGRRGGGGGHRGRGNNKGG
DGGGGGRKNWFKMSVPYGKKYDKDWLITALQNICSMPFTPVHYHVEGNRAEFFIDDSTTA
NALFKVSRKITDKEGYKVTVLMNPCPPPSFLQSELKPADLEHLKQCMAKRFDGSQQALDL
NNIRIDPDLVSQNIDVTLNRKNSMRAVVKIIEENIPELVCLNLSNNKLFRLDDLSELVNK
VPNLKTLNLSHNELKTERELDRIKGLKLVELWLERNPLCDYFKDQASYISEVRERFPRLL
KLDGQDLPPPIVFDVEVTPAALPPCKPSYFCSEEIKTPIVGFLQQYYSVYDSGDRQPLLD
AYHDGATFSLSMPFTMQNPSRCSLGDYHKDSRNLKKLKDPTTRFRLLKHTRLNVVAFLSE
LPKTQHDTASLIVDVNTFTNTLLSFTVTGVFKEVEGKSRDSVRAFCRVFVTVPAGGTSLC
IVNDELFVRNATTEEIRRAFVAPAPTPSSSPVPTLSAPQQEMLSAFSLKSGMNLEWSQKC
LQDNEWDFNRAGQVFTDLKAHGKIPDVAFIK
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacagccgacgattcacgttacaacgatcacgatgaccgagttggaggacaaaag
gttcgcaaccgtaaaggcagagggcctttcagggcccctatgtatagtgaccaggggcca
gtagggccaagaccaagacatcgtggtagccaaagaggcggcggcggcccgggacccaga
gcgagattcgacgatgaggatggagatgtggcaatggcggacagcaactcccaagatgga
tcctcccaacacagatttaacccttatggaaggccaaatcggcgtggtgacgaccgattt
gaccggggccgcagaggtggtggaggaggtcacaggggtcgtgggaataacaaaggaggg
gatggaggtggaggtggccgcaagaactggttcaagatgtctgtcccctatggaaagaaa
tacgacaaagactggctgataacagcactgcagaatatctgctccatgcccttcacccca
gtacattaccacgtagagggaaaccgagcagagttctttattgatgattccacgactgcg
aatgccttgtttaaggtatcacggaagatcacagacaaagagggctacaaggtgactgta
ctgatgaatccctgtcctccaccctcctttcttcagtctgaactaaagccagctgatctg
gagcacctgaagcaatgcatggctaaacgttttgatggctctcaacaagcgctggacttg
aacaacatccggatagacccagacctggtgtcccagaacattgatgtgactttgaacaga
aagaactccatgcgtgctgttgttaagataattgaggagaatattccagagcttgtttgt
ctgaaccttagcaacaacaagctatttaggctggatgacctgtcagagctggtcaacaag
gttcccaacctgaagacactcaacctttctcataacgagttaaagacagagcgcgagctg
gacaggatcaagggtcttaagctggtggagttatggctggagaggaaccccctttgtgac
tatttcaaggaccaggcttcatacatcagcgaggtgagagagaggttccccaggcttctc
aaactggacggtcaggatctccccccgcccatagtctttgatgtggaggtgactcctgcc
gcccttccaccttgcaagcccagctacttctgctctgaagagatcaagactcccatcgtt
ggcttcctacaacaatactacagtgtgtatgactccggagacagacagcctttgttagat
gcctaccacgatggagcaaccttctccttgagcatgcccttcaccatgcagaacccctcc
aggtgcagtcttggagattaccataaagacagtcgcaacctgaaaaagctcaaggatccc
accacacgattccgcttactgaagcacactcgtctgaatgtggtggctttcctgagcgaa
ctgcccaaaacgcagcatgacactgcatctctaattgtggacgtcaacaccttcaccaac
acattactgtcgttcacggtcactggagtgttcaaagaagttgaaggtaaatcccgtgac
tctgtgagagctttctgtcgggtgtttgtcacagtgccagctggagggacaagtctttgc
atagtgaatgacgagctgtttgtgcgcaatgctacgactgaggagatccgccgggccttt
gtggcacctgcccccaccccatccagcagtcctgtccccaccctctcagccccccagcaa
gagatgctctctgccttctcactcaagtccggcatgaatcttgaatggtcccagaagtgc
ttacaagacaatgagtgggatttcaaccgagcagggcaggtcttcacagacctcaaggct
catggaaagatcccagatgtcgctttcataaagtga
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