KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112231331
Entry
112231331         CDS       T05605                                 
Name
(RefSeq) U4/U6.U5 tri-snRNP-associated protein 1
  KO
K11984  U4/U6.U5 tri-snRNP-associated protein 1
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:otw00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112231331
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:otw03041]
    112231331
   04121 Ubiquitin system [BR:otw04121]
    112231331
Spliceosome [BR:otw03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP specific factors
    112231331
 Complex C
   U4/U6.U5 tri-SnRNP specific factors
    112231331
Ubiquitin system [BR:otw04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    112231331
SSDB
Motif
Pfam: SART-1 HIND
Other DBs
NCBI-GeneID: 112231331
NCBI-ProteinID: XP_024253798
LinkDB
Position
LG33:complement(35870504..35877417)
AA seq 780 aa
MGSSKKHKEKGRDKDKDAEERGHREHKKHRHKDRERDKERDGNREREKRKRSRSKERSVR
GSERDGRSKGERSTGEPRVKKEKVEPGCEGTEIAPQSASGDASLTIEETNKLRAKLGLKP
LEMTDTTKELGTKEQPIVAETINPVYIKQQKEMREKLAALKEKRLLNKKLGKVKTLAEED
WLDDTVAWVERSRKMSKEKELAEKRAKLLQEMDEEFGVSNLVEEEFGQTKKVAYSSRDLK
GLTVQHKMESFNEGETVILTLQDKDVLDEEGGDVLVNVGLVDKENAEKNVELKKKKPDYK
AYEEDESVDDMVTFKPRTVLGKYDEEIDGEKKKSFRLSKGGCAEGERERELQAIRETLRN
QAQSLEMPVLAIASEYYTPQEMVGFKKTKQRVRKIRKKEKALPDELQLDDTRNTDFGSRA
RGRGRKQLDEEGQEGVKERVIIPGLDVPQQSDDIRMADMDISDDENFTPPDPAVLEEDEA
EQELQKQLEKQRKLKQKQLLKNSGEKVAEQVRGLARGDESDDEEDKNNLNIVFNATSEFC
RTLGDIPTYGLSGNREDQEDIMDFEQEAERDGAGGSDSDGDENVGWSIVNVDEEQKQPDF
ATASTTILDEEPIVNSGLAAALALCKNKGLLDTQMQKISRVRAPTGALPNDNYSIEDKMT
IDDKYSRREEYRGFTQDFKEKDAYKPDVKIEYVDESGRKLTPKEAFRQLSHRFHGKGSGK
MKTERRMKKLEEEALLKKMSSSDTPLGTVALLQEKQKSQKTPYIVLSGSGKSMNANNITK
NT seq 2343 nt   +upstreamnt  +downstreamnt
atgggttcgtcgaaaaaacacaaggaaaagggccgtgataaagataaggatgccgaagaa
cgtggtcaccgcgaacacaaaaaacaccgtcataaggaccgggagagggacaaggaacga
gatggcaaccgagagcgggagaaaaggaaacggtccagatcgaaggaaaggagtgtacgg
ggttccgagagagacggtcgcagtaaaggggagaggagtactggggagcctcgcgtaaag
aaagaaaaagtggagcccggatgtgagggcacagaaattgcaccacagtctgcaagtgga
gatgcctcacttaccattgaagagacaaacaagctgagggccaagcttggtctgaagcct
ctggaaatgactgacaccactaaagagctcggcacgaaggagcagccaattgttgcagag
acgatcaacccagtgtacattaaacagcagaaagagatgagggagaaactggcagctctg
aaggaaaagaggctcctcaataagaaactggggaaagtgaagaccttagcagaagaagac
tggctggatgacactgttgcctgggttgagaggagccggaagatgtccaaagagaaagaa
ctggcagagaagagagccaagcttctgcaggagatggatgaggagtttggtgtgagcaat
ctggtggaggaggagtttggacagaccaagaaggttgcttacagctcccgggacctaaag
ggtctcactgtccagcacaagatggagtcatttaatgaaggggagactgtcattctcaca
ctgcaagacaaagatgtgcttgatgaagaggggggcgatgttcttgtaaatgtgggtctt
gtggataaagaaaatgctgagaagaatgtggagttgaagaagaaaaagcctgattacaaa
gcctatgaagaggacgagagtgtggatgacatggttacgttcaagccgcgtactgtgctg
ggcaagtatgatgaggagattgatggagagaagaagaagagtttccggctgagcaaaggg
ggctgtgctgagggggaacgggaacgagagctccaggccatcagggagaccctgaggaac
caggcccagtccctggagatgcctgtactcgctattgcctcagagtactacacaccccag
gagatggtgggctttaagaagaccaagcagcgcgtcaggaagatcaggaagaaggagaag
gcattgcctgatgagctccaattagacgacacacgcaacaccgactttggctccagggct
cggggtcggggtcgcaagcagttggatgaggagggccaggaaggggtgaaggagcgtgtc
atcataccgggactagatgtaccccaacagtcagatgacatcaggatggcggacatggac
atcagtgacgatgagaacttcaccccccctgatccggctgtgctggaggaggacgaggca
gagcaggagctgcaaaagcagctggagaaacagcgaaaactcaaacagaaacagctgctc
aaaaactctggggaaaaggtggcagagcaggtccgagggcttgcaagaggggacgagagt
gacgatgaagaagacaagaacaacctgaacattgtgttcaatgccacctctgagttctgc
agaactctgggtgacatccccacctacggtctgtcgggaaaccgagaggaccaggaggac
atcatggatttcgagcaggaggcggagagagatggcgctggcggttcagactccgacggg
gatgagaatgttggctggagcatcgtcaacgtggatgaggagcagaagcagcctgatttt
gccacagcctcgaccaccatcctggatgaagaacccattgtcaactctgggctggctgct
gccttggcgctctgcaagaataagggtctcttggacactcaaatgcagaagatatcccgt
gtccgtgcgcctaccggtgccctgcccaatgataactacagcattgaggacaagatgacg
atagatgacaagtacagtcggagggaggaatatagaggcttcacccaggacttcaaggag
aaggacgcctacaagccagatgtcaagattgagtatgttgatgaatctggacggaagctc
actcccaaagaggctttccggcagctctcacatcggttccatgggaaggggtctggcaag
atgaagactgagaggaggatgaaaaagctggaagaggaagcgctgctgaagaagatgagc
agtagcgatacccctctgggaactgtcgctttgcttcaggagaagcagaagtcacagaaa
accccctacattgttctgagtgggagtgggaagagcatgaatgcaaacaacatcaccaaa
taa

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