Oncorhynchus tshawytscha (Chinook salmon): 112231355
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Entry
112231355 CDS
T05605
Name
(RefSeq) lys-63-specific deubiquitinase BRCC36 isoform X1
KO
K11864
BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03440
Homologous recombination
otw04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
112231355
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
112231355
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
otw01002
]
112231355
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
otw04121
]
112231355
03036 Chromosome and associated proteins [BR:
otw03036
]
112231355
03400 DNA repair and recombination proteins [BR:
otw03400
]
112231355
Peptidases and inhibitors [BR:
otw01002
]
Metallo peptidases
Family M67
112231355
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
112231355
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
JAMM
112231355
BRISC complex
112231355
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
BRISC complex
112231355
DNA repair and recombination proteins [BR:
otw03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-A complex
112231355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCC36_C
JAB
Prok-JAB
UPF0172
REP_ORF2-G2P
Motif
Other DBs
NCBI-GeneID:
112231355
NCBI-ProteinID:
XP_024253845
LinkDB
All DBs
Position
LG33:36395105..36438137
Genome browser
AA seq
296 aa
AA seq
DB search
MAVSAVHLESDAFLVCMNHALSTEKEEVMGLCIGEVDTNRIVHIHSVIILRRSDKRKDRV
EISPEQLSSATTEAERLADMTGRPMRVVGWYHSHPHITVWPSHVGKNQSTPLPHQFHNFS
FHCHCKLFQLVCLHHSFSTTDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQ
SVQAQKGSEYERIEIPIHVVPHEAIGKVCLESAVELPRILCQEEQDTYRKIHSLTHLDPI
TKIHNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQTRKSIIELQLEKERLTQELATM
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atggcagtgagcgcagttcacctcgaatcagatgcatttttggtttgcatgaatcatgca
ttaagtaccgagaaggaggaagtaatgggactctgcatcggagaggtggacaccaaccgc
atcgtccacattcactctgttattattctgcgacgctcagacaagaggaaggatcgcgtg
gaaatctcgcctgagcagctatcttcagctactaccgaagctgagaggttggctgatatg
actggacggccgatgcgtgtagttggttggtaccactctcacccccacatcactgtgtgg
ccatcacatgtgggtaagaaccagagcacccctctaccacatcagttccacaactttagt
tttcactgtcattgcaaactgtttcagttggtgtgtctgcatcattcattttctacaaca
gatgtaaggacacaggccatgtaccaaatgatggaccagggctttgttgggctgatattc
tcctgtttcattgaggataagaacacaaaaactggtcgagttctctacacctgcttccag
tctgtacaagcccagaaaggctctgagtacgagagaatcgagatcccaattcatgtggtc
ccgcatgaggccattgggaaagtgtgccttgaatcagcagtggagctcccaagaatcctc
tgccaggaagagcaggatacctacagaaagattcacagcttaactcacctggatccgatc
acaaagatacacaatggctcagtgttcactaagaacctgtgcagtcagatgtctgctgtg
agtggtcccctgctgcagtggctggaggaccgtttggagcagaccagaaagagcatcatt
gagctgcagctggagaaggagagactaactcaggagctggcaaccatgtga
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