KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112231366
Entry
112231366         CDS       T05605                                 
Name
(RefSeq) period circadian protein homolog 1 isoform X1
  KO
K21944  period circadian protein 1
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:otw00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:otw03400]
    112231366
DNA repair and recombination proteins [BR:otw03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    112231366
SSDB
Motif
Pfam: Period_C Per3-like_PAS-A bHLH_PER PAS_3 PAS_11 PAS
Other DBs
NCBI-GeneID: 112231366
NCBI-ProteinID: XP_024253865
LinkDB
Position
LG33:36935499..36945207
AA seq 1489 aa
MSDENAYTTSVNDTSGVGVEENVVGLKAGCQSPESGLSQTGSSGSSNGKRIRSGGKSSPK
SSNSDDTDAHSSGNDSAEREVEGHIGRETSTCSSSHNGKDSAMETTESKSANSHSSSPPN
SSMVYSLLSGSSEQDHPSTSGCSSDQPARLQTQREMLKALKELKIRMPADHWAKGRSSTL
ASLQYALNCVKQVRANQEYYHQWSVEESHGCSLDLSSFTTEELDNITSEYTLQNTDTFSV
GVSFLSGKLVYISPQASPMLRTKPNRLQGTLFSELLAPQDVSTFYSSTAPCRLPPWASCT
GSMTSPVDCTQEKSMFCRISSGRDSEGEVRYYPFRMTPYQLTLRDSDMSQPQPCCLLIAE
KVHSGYEAPRIPADKRIFNTSHTPGCLFQEVDERAVPLLGYLPQDLVGTPVLMYLHPDDR
PVMVAIHKKILQSAGQPFEHSPLRMCARNGEYLTIDTSWSSFVNPWSRKVAFIVGRHKVR
TSPLNEDVFTPSMEVEVRAMSPEIPRLSEQIHRVLVQPVHSGVSQGYCSSHGSQPHRPSP
GSSGSSSPSTKGIIQMTIQRPQQMTFQQMCKDVHMVKTNGQQVFIESRNRPPLRKHASAG
DLVTPENLNKDLGPIGALGPTKTLASVQSRKDPSANYSYQQINCLDSIVRYLESCNVPNT
VKRKCGSSSCTTSSTSDDDKQRELSGTAKDFEGSQGKEGSKGGPQMSPLALHCKAESVVS
LTSQCSFSSTIVHVGDKKPPESDIIMMMEETPPTTTAPAINNAITTPVTPRPSTFPSPAT
PSPAQPERDSRRLAGCSGSLGLTKEVLSAHTQQEEQVFLSRFRDLGQLRMLDPGPPLRGH
TTTPKGVHTSKDYPTGGNGRRRGRGAKKPKHQQEGSQHGGRPKTGSGMNRSSRREGQGHQ
GPMFPMGQPLMRQGPLTSSSSWPTSVASLPPAVSQYPPGVLPFFPLYPNVQQQQLLAHTG
VNPNAMQMGYPSPQPGFQYPLHANQISMPMAPPMMVVLPNYMFPQLNGGVPQLNQLNTAM
PQYNTAMPHLNPSIPGMAQLNQALPQFNQAVPLPQLNPVLAQFNPSVTQMNGMPQAQHNP
SQVNPALQVNPALSMIPQHFHNPNPTLPFPNPIPVPGLPCFALPRIDPTFVPRGNSRSST
PQSTCQSPLEGTNTPLFQSRCSSPLNLLQLEELPGNRQEGMSTGAQQTPPPPGSSSQVGG
QGSVNRNSNMKGDAKEYDNADVDNQDAMSTSSDLLDLLLQEDACSGTGSAASGSGSSGSG
SSGSNGCSTSGSDRRSSNTSKYFGSVDSSENDHKQAAGGAEEAQLMKYVLQNPIWLLMAN
TDDKVMMTYQMPTRDRETVLRQDRMVLRAVQKQQPHFTEEQKRELIQVHPWMGTGRLPQA
INNPTCTGCSSPPATSAPRTFDVELQDMDLTGVLQLQEEATAHTETHVTMATGTSISPPQ
APQTETKGGEAERQGEQEGNCKDTRVKELEVTSSSSVTEKGDSVAVNGN
NT seq 4470 nt   +upstreamnt  +downstreamnt
atgagtgatgagaatgcatataccacttctgtaaatgacactagtggagtaggtgtagaa
gaaaatgtggtgggactgaaggcgggctgccagtcccctgagtctggactgagtcagact
ggcagctctggtagctccaatggaaagagaattcggtctgggggcaagtcctcccccaag
tcctcaaactccgatgacaccgatgcccactcgagtgggaacgactcagccgaacgagag
gtggaaggtcacataggacgtgagacatcaacctgcagcagctcccataacgggaaggac
tctgccatggagacaacagagagcaaaagcgccaactcccacagctcttcccctcccaac
agctctatggtctacagcctgctgagtggcagctcggagcaggaccacccgtccaccagc
ggatgcagcagtgaccagccagcccggctgcagacccagagagagatgctcaaggctctg
aaggagctaaagatccgcatgcctgcagaccactgggcgaaaggccgctccagcaccctg
gcctccctgcagtatgctctcaactgtgtcaaacaagtccgagcgaatcaggagtattat
caccagtggagtgtggaagagagccacggttgcagtctggacctctcttccttcaccaca
gaggaactggacaacattacttctgaatacacactccagaacacggacacgttctcagtg
ggagtgtccttcctctctgggaagttggtgtacatctcccctcaggcctctcccatgctg
cgcactaagcctaatcgactccaggggacactcttctctgagctgttggccccccaggac
gtcagcactttctacagcagcactgctccctgccgcctgcccccctgggcctcctgtact
ggttccatgacctcccctgtggactgcacccaggagaaatccatgttctgccgtatcagt
agtgggagggacagtgagggggaagtgcgatactaccccttccgtatgaccccctaccag
ctaaccctacgggactccgacatgtcccagccacagccctgctgcctgctcatcgctgag
aaggtgcactcaggatacgaagctccccgcatcccagcggacaagaggatttttaacact
agccacacccccggctgtctctttcaggaagtggatgaaagagctgtgccgttgctaggc
tacctgccccaggacctggttgggactcctgtcctcatgtacctccaccctgatgacagg
cctgtcatggtggccatacacaagaagattctccagtcagcggggcagccctttgaacac
tcgcccttgcgtatgtgtgcccggaacggggagtatctcaccatagataccagctggtcc
tccttcgtcaacccctggagccgcaaagtggccttcatcgtgggtcgacacaaagtcaga
acgagtcccctgaacgaagatgtgtttacccctagtatggaggtggaggtgcgggccatg
tctccagagatccccaggctcagtgagcaaatccaccgtgtgctggtgcagcctgtccac
agtggtgtctcccagggctactgcagctcccatggatcccagccacacaggcccagcccg
ggctcctcaggcagcagcagcccctccactaaggggatcatccagatgactatccagaga
ccacagcagatgacattccagcagatgtgtaaggacgtccacatggtgaagaccaatggt
cagcaggtcttcatcgagtcccgtaaccgcccaccgctccgcaaacacgccagcgctgga
gacctcgtgacgccagagaatttaaacaaagacttgggacctattggcgctctggggcca
actaaaaccctggcctccgtgcagtcaaggaaagatccgtcagccaactactcctaccag
cagatcaactgtctggacagcatcgtacgctacctggagagctgtaacgttcccaacaca
gtgaagaggaaatgtggctcctcctcctgcaccacatcatcaacgtcagacgatgacaag
cagagggagttgtctggaacagctaaagatttcgaagggtcacagggtaaggaagggtct
aaaggggggccacagatgagtcctctggcgctgcactgcaaggctgaaagtgtggtctct
ctcacgtcccaatgcagcttcagcagcaccatcgtccatgtaggggacaagaagccccca
gagtcagatattatcatgatgatggaggagacaccacccaccaccaccgccccagccatt
aacaacgccatcaccacgccagtgaccccccgtccctcaacctttcccagcccagcaaca
cccagccctgcccagcctgagagggatagccgcaggttggctggatgctcaggcagcctg
ggtctgaccaaggaggtgctgtctgcccacacccagcaggaggaacaggtgttcctgagc
cggttcagggacctgggacagctccgcatgctggaccccggtcctcctctgagaggacac
accaccacacccaaaggagtgcacacctcgaaggactacccaacaggtggtaacggacgg
aggaggggccggggggcaaagaagccgaagcaccagcaggagggctcccagcacgggggc
cgtcccaagacaggctcagggatgaacagaagttccagaagggaagggcaggggcaccaa
ggccccatgttccccatgggtcaacccctaatgagacagggacctctgacctcgtcctct
tcctggcccacctctgtggccagcctccctcctgccgtgtcccagtaccctccaggagtc
ctgcccttcttccccctctaccccaacgtgcaacaacaacaactcctggcccacaccggg
gtgaaccccaatgccatgcagatgggttaccccagcccccagccaggcttccagtacccc
ctgcatgccaatcagatttccatgccaatggctcccccgatgatggttgttctgcccaac
tacatgttccctcaactcaatggaggtgtgccacagctcaaccagctcaatacagccatg
cctcagtataacacagccatgcctcaccttaaccccagtatccctggtatggcacaactt
aaccaggcactaccgcagttcaaccaggctgtcccactaccacaactcaatcctgtcttg
gctcaattcaacccttctgtgacgcagatgaatggcatgcctcaagctcaacacaacccg
tcacaggtcaaccctgcattacaggtcaatcctgctttgtcgatgatcccacaacatttt
cacaatcccaacccaacattacctttcccaaatcctattccggtgcccgggcttccttgc
tttgccttacccaggattgatcccacttttgtcccacgtggcaactcccgctccagcacc
cctcagtccacatgccaatcccccctggaggggaccaacacgcccctcttccagtcacga
tgctcctcccccctcaacttgctgcagctggaggagttgccaggcaacaggcaggagggc
atgtcaacaggggcgcagcagaccccacccccacctggctcgtcatctcaggtcggaggt
caaggctctgttaaccgcaacagcaacatgaagggtgatgccaaagagtacgataatgct
gatgttgataaccaggacgccatgtccacctccagtgacctgctggaccttctgctgcaa
gaggatgcctgctcgggcaccggctcggctgcctctggctccgggtcctctggctccggg
tcctctggctctaatggatgcagcacctcagggagtgacagaagaagcagcaacaccagc
aagtactttggcagcgttgactcatcggagaacgaccataagcaggcagcaggcggggct
gaagaggcccagctcatgaagtatgtccttcagaaccctatctggctcctcatggccaac
acagatgacaaggttatgatgacgtaccaaatgcccaccagggacagggagactgttcta
aggcaagatcgtatggtactgagggcggtgcagaaacagcagccgcacttcactgaggag
cagaagcgagagctgatccaggtccacccctggatgggcactggacgcctgccacaggcc
atcaacaaccctacttgtaccgggtgcagttctcctccagctacctccgccccccggacc
tttgatgtggagctgcaggacatggatctgactggggtcctccagctacaggaagaggct
accgcacacacagagacacatgttaccatggcaacaggcacttccatctctccaccacaa
gccccccagacagagactaaggggggtgaggctgagaggcaaggggagcaggaaggaaac
tgtaaggacaccagagtgaaggagttggaggtaacatcctcatcatctgtaacagagaaa
ggggactctgtggctgtaaacggcaactga

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