Oncorhynchus tshawytscha (Chinook salmon): 112231406
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Entry
112231406 CDS
T05605
Name
(RefSeq) pre-mRNA-splicing factor RBM22
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112231406
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
otw03041
]
112231406
Spliceosome [BR:
otw03041
]
Complex B
Other components
Prp19-related factors
112231406
Complex C
112231406
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
zf-CCCH_RBM22
RRM_1
zf_CCCH_4
Torus
zf-CCCH_2
RRM_occluded
Nup35_RRM_2
zf-CCCH
zf-CCCH_4
zf-CCCH_10
RRM_YTH1
RRM_3
zf-CCCH_PARP12
zf-C2H2_16
Motif
Other DBs
NCBI-GeneID:
112231406
NCBI-ProteinID:
XP_024253909
LinkDB
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Position
LG33:37568216..37581277
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AA seq
430 aa
AA seq
DB search
MATSLGANTYNRQNWEDADFPILCQTCLGENPYIRMTKEKYGKECKICARPFTVFRWCPG
TRMRFKKTEACQTCSKIKNVCQTCLLDLEYGLPIQVRDTGLSIKDDVPKSDVNKEYYTQN
MEREIGNSDGTRPVGLLGKAPSSSDMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECP
YRHEKPTDPDDPLADQNIKDRYYGINDPVADKLLKRASTMPRLDTPEDKSITTLYVGGLG
DSITDSELRNHFYQFGEIRTTTIVQRQQCAFIQFATRQAAELAAEKSFNKLIINGRRLNV
KWGRSQGEGGRRDGRGGKDGRGEGLTEMGLKLEPVPGLPGALPPPPVDEDTPTNYFNLGP
NSAPPVMNISLPPPPGVAMPPPPGFGPPMFHSMDPMGMPPPMGMRPPGHVHYPSQDPQRM
GAHASRHGGS
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgtctttaggagctaacacttacaatagacaaaattgggaagacgcggatttt
cccattctctgccagacatgtcttggagagaatccttatattcgaatgaccaaggagaag
tatggcaaggagtgcaagatatgtgccagaccattcactgtgttccgatggtgtcctggg
acccgcatgcgcttcaagaagacagaggcgtgccagacgtgcagcaagataaagaatgtc
tgtcagacctgcctgctggatctagagtatggcttgccaatacaggtccgagacactggt
ctgtcaatcaaggacgacgtgccaaaatcagatgtgaacaaggaatactacacacagaac
atggaaagagagatagggaactctgatggtacccggcctgtgggtctcctgggtaaggcc
cccagctctagtgacatgctgctgaagctagcccgcaccacaccttactacaagaggaac
agaccacatatctgttccttctgggtgaagggagagtgtaagagaggagaggagtgtcct
tacaggcatgagaagccaactgatccagacgatcccctggcagaccagaacattaaggac
cgttactatggtatcaacgaccctgtggctgacaagctgctgaagagagcctccaccatg
ccgagactggacactccagaggacaagtccatcactacactgtatgtgggggggctcgga
gactccatcacagactctgaactcaggaaccatttctaccagtttggggagatccgaacc
accaccatcgttcagaggcagcagtgtgccttcatccagtttgccacccgtcaggctgca
gagttagctgctgagaaatccttcaacaagctcattatcaacggtcgtagactcaacgtc
aaatggggcaggtcccagggagaggggggaaggagggacgggagaggggggaaggacgga
aggggagaagggctgactgagatggggctgaagctggagccggtacctgggctgcctgga
gcgctacctccaccgcctgtggatgaagacacccctaccaactacttcaacctgggcccc
aactcagctcctcctgtcatgaacatcagtctacccccaccccccggtgtggctatgccc
ccccctccaggctttgggccacccatgttccactccatggaccctatggggatgccccct
cccatgggcatgaggccccctggccatgtccactacccctcccaggatccacagcgcatg
ggtgcacacgccagccgtcacggaggctcctag
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