Oncorhynchus tshawytscha (Chinook salmon): 112231416
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Entry
112231416 CDS
T05605
Name
(RefSeq) collagen alpha-1(XXIII) chain isoform X1
KO
K24355
collagen type XXIII alpha
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
otw00536
]
112231416
Glycosaminoglycan binding proteins [BR:
otw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112231416
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
112231416
NCBI-ProteinID:
XP_042167228
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Position
LG33:38000007..38106362
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AA seq
460 aa
AA seq
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MGSPAKSDEKTMESINYNSHKSNFSHCLGGLPTAFCVILSVCSMAFCFLVNFRTAHLEYR
VQTLEMERMSPIPSDENGTVPGLQDIIEKLVHERLTKALPKLRAARDVIQECSCPPGDCG
ELTPTHRFIVLVEAQEFQINSTQYGPPGKRGRMGRRGDSGSPGTPGRDGYPGPLGMDGKP
GGPGPMGSQGLSGPKGEKGDQGDMGPRGLPALAGSAGLLSNQILTVKGDQGQAGPPGPPG
PPGSPGPRGPPGNTGKDGPRGPPGEQGPPGQDGIDGLEGLMGPPGQKGEDGQQGVPGSQG
SPGLKGEQGAAGDQGRTGLDGLPGMKGLPGEKAVPGSYDNIGLGQVVQGLPGPPGPPGGQ
GSKGDSGSPGAPGADGDKGAKGDRGDDGMPGVAGEKGERGLMGQTGLAGADGKRESEGIQ
GLRTVWPRGSLSQALQGLPGPRVSWDLMEGLAPRGNQVRE
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgggatcccccgcaaaatctgacgaaaagaccatggaatcaatcaactacaacagccac
aaatccaatttttcgcattgtttaggcgggctaccaaccgcattttgcgtcattttgtcg
gtgtgttctatggcattttgttttttggtaaacttcaggacagctcacctggagtacaga
gtgcagactttggagatggagagaatgtccccgatcccttccgatgagaatggaacggta
cctggtcttcaggatatcattgaaaaactagtgcacgagagactgaccaaagcactgccc
aaacttcgtgctgccagagatgtcattcaagagtgctcctgtcctccaggagattgtggc
gagttaacgccaacacaccgcttcatcgtgttggtggaggcccaggaatttcaaatcaac
tcaacacaatatgggcctccaggaaaacggggaaggatgggaagacgaggcgactctgga
tctccgggcacgcctggacgggatggttacccgggcccacttgggatggatgggaagcct
ggtggtcctggtcctatgggaagccagggactgtctgggccaaaaggagaaaagggagac
caaggagatatggggcccaggggactccctgcactcgcgggctctgcaggtctgctcagt
aatcagattctcacggtcaagggtgaccagggtcaggctggcccccctggacccccgggg
ccccctggatcaccagggcccagaggaccccctgggaacacagggaaggatgggcccaga
ggaccccctggagagcagggtccacctggtcaagatggaatcgatggattagagggactg
atgggtcctcctggacagaagggtgaggatggacagcagggcgtgcctggatcacagggg
tctccggggctaaagggggagcagggggctgctggtgaccagggcaggactggccttgat
ggactaccagggatgaagggcttaccaggagagaaggctgttcctggctcctatgacaac
atcggccttggccaagtcgttcagggtctcccagggccaccagggcccccaggaggccaa
gggtcaaagggagattcaggctcacctggtgcacctggagctgatggggataagggagcc
aaaggggatagaggtgatgatgggatgcctggagtggcaggggagaagggagagcgaggc
ctgatgggccaaactgggcttgcgggagctgacggaaaaagggagagcgaggggattcaa
ggtttgaggacagtctggcccagaggatctctatcccaggccctccagggcctcccgggc
cccagggtttcatgggacttgatggaaggcctggccccaagggggaaccaggtgagggag
tga
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