Oncorhynchus tshawytscha (Chinook salmon): 112231450
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Entry
112231450 CDS
T05605
Symbol
hmgb1a
Name
(RefSeq) high mobility group protein B1a isoform X1
KO
K10802
high mobility group protein B1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03410
Base excision repair
otw04140
Autophagy - animal
otw04217
Necroptosis
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
112231450 (hmgb1a)
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
112231450 (hmgb1a)
09143 Cell growth and death
04217 Necroptosis
112231450 (hmgb1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112231450 (hmgb1a)
03400 DNA repair and recombination proteins [BR:
otw03400
]
112231450 (hmgb1a)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
otw04147
]
112231450 (hmgb1a)
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Nucleosome assembly factors
HMG (high mobility group) proteins
112231450 (hmgb1a)
DNA repair and recombination proteins [BR:
otw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
112231450 (hmgb1a)
MMR (mismatch excision repair)
Other MMR factors
112231450 (hmgb1a)
Exosome [BR:
otw04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
112231450 (hmgb1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box_2
HMG_box
HMG_WDHD1
HTH_Tnp_Tc3_2
HTH_32
NOA36
HMG_box_5
Sigma70_r4
HTH_28
Dicty_REP
Motif
Other DBs
NCBI-GeneID:
112231450
NCBI-ProteinID:
XP_024253973
LinkDB
All DBs
Position
LG33:complement(40391585..40397767)
Genome browser
AA seq
345 aa
AA seq
DB search
MRRKELSEEFRDKVVDRHRLGEGYKKISHTLSIPLGTVRSIIKKWKVYGTTETLPRSGRP
SKISSWAKRILALELTMRPTASLKELQSSMAEMGENVHESTIARSFANCSRYGRSERRRT
LQKANSDLQSRAEFAEKHLDIEMGKDPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFS
EFSKKCSERWKTMSAKEKGKFEDLAKLDKVRYEREMRSYIPPKGEKKKRFKDPNAPKRPS
SAFFIFCADFRPQVKGETPGLSIGDVAKKLGEKWNNLTAEDKVPYEKKASKLKEKYEKDI
TAYRNKGKVPVSMPAKAAAPAKDDDDDDDDDDDEDDDDDDDEDDE
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atgaggcgcaaagagctttcagaagagttcagggataaagttgtagatcggcacagatta
ggggaaggttataagaaaatttcccatacattgagtatcccattgggtacagtcaggtca
atcattaagaagtggaaggtgtatggcaccactgagactctgcccagatcaggacggcct
tccaaaataagcagttgggcgaaaaggattcttgctctggaactcaccatgagaccaact
gcctcgttgaaagagctgcagagttccatggctgagatgggagaaaatgtccatgaatca
actatagctcgatcattcgccaactgtagccggtatggccgatcggaaagaaggagaaca
ttacagaaagcaaacagcgatctccaatcacgtgcagagtttgcagaaaagcatttagat
attgagatggggaaagatccaaggaagccgaggggcaagatgtcctcctatgcctacttt
gtccagacctgtcgggaggagcacaagaagaaacacccagaagcttccgtcaacttctca
gagttctccaagaagtgctctgagagatggaagaccatgtccgccaaggagaaggggaag
tttgaggatctggccaaactggacaaggtgcgatatgagagggagatgaggagctacatt
cctcccaagggagagaagaagaagaggttcaaggaccccaacgcccccaagagaccatcg
tctgcgttcttcatcttctgcgctgacttcagaccccaggtgaagggggagaccccgggc
ctgtctatcggtgatgtggccaagaagctgggagagaagtggaacaacctaacagcggag
gacaaggtaccctatgagaagaaggcttccaagctgaaggagaagtacgagaaggacatc
actgcgtaccgcaacaagggtaaggtgccggtcagcatgccagcgaaggccgccgcaccc
gccaaggacgacgacgacgatgatgacgacgacgatgatgaggatgacgatgatgacgat
gatgaggatgacgagtag
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integrated database retrieval system
