Oncorhynchus tshawytscha (Chinook salmon): 112231490
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Entry
112231490 CDS
T05605
Symbol
xrcc4
Name
(RefSeq) DNA repair protein XRCC4
KO
K10886
DNA-repair protein XRCC4
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
112231490 (xrcc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
otw03400
]
112231490 (xrcc4)
DNA repair and recombination proteins [BR:
otw03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
112231490 (xrcc4)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRCC4_CC
XRCC4
XRCC4_C
XLF
BRE1B
PAXX
PigL_N
NET2A_C
ZapB
Leu_zip
DUF3859
KASH_CCD
PTX3_N
FapA
ALMT
CC_CEP250
Motif
Other DBs
NCBI-GeneID:
112231490
NCBI-ProteinID:
XP_042167196
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Position
LG33:8743670..8774754
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AA seq
336 aa
AA seq
DB search
MHVTVREVCISSESETSYFLRVEWRGRDLGSGFLLLLTDGQNAWRGEVSEDAVREEAEEL
EMQTDRYIQDLQQALTGTGPSTDYSFTLTHNPGPMANMTLAYEKVQRDISFCLGSVLLGK
IPEPVEEVRALLTHGLERGTALQNHNHLLKEENHRLKQELQHINAELKRFVSGKETLESE
LYSRFTLVLNEKKAKIRSLQKNLTHLQETREEGESSSPGKGTKKTTGQTREEDEYEASTD
DEQLQPASIEPTQGTSRSRSPLDDSLNDIPDVAPSRKRRFRHLQPPDTVAKRPTSEPAQK
PRRDPLPSSRAAANKDQAPQHSSDVIPDAEDLFEDI
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atgcatgtgacggtgcgtgaggtctgtatctcctcggagtcagagacttcctacttcctg
cgagtggaatggagggggcgggacttaggctctggcttcctgttactgctcaccgatgga
cagaatgcatggagaggagaggtatcagaggatgcagtgagggaggaggctgaggagttg
gagatgcagacagatcgttacatccaggacctccagcaggccctgactgggactggaccc
tctactgactacagcttcaccttgacccataaccccggcccaatggccaacatgaccctg
gcctacgagaaggtgcagagggacatctcgttctgcctgggttctgtgttgctgggtaag
attccagagccagtggaggaggttagagcgttactgactcacggtctggaacgtggaacc
gcactgcagaaccacaaccacttactaaaggaggagaaccacaggctcaaacaggagcta
caacacatcaatgcagagttgaagcggtttgtcagtgggaaggagacactcgagtcagag
ctgtactctcgcttcaccctggtgctgaatgagaagaaggccaagatacgcagtctgcag
aagaacctcacacacctgcaggagaccagggaagagggagagagcagcagtccagggaag
ggaacgaaaaagacgacaggacagaccagagaggaggatgaatatgaagcgagcactgat
gatgagcagttacagcctgcttctatagaacccacccaggggacttcgcgtagccgcagc
ccattggacgacagtctgaatgacatcccagacgtggcaccctcccgtaaacgccgcttc
cgccacctgcaacctcctgacaccgttgctaagagaccgacctcggagccagcgcagaaa
ccgaggagggaccccctgccatcatccagagcagcagccaataaggaccaggctccccag
cattctagtgatgtcattcctgatgctgaggacctgtttgaggacatctga
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