Oncorhynchus tshawytscha (Chinook salmon): 112231598
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Entry
112231598 CDS
T05605
Symbol
ssrp1b
Name
(RefSeq) FACT complex subunit SSRP1 isoform X1
KO
K09272
FACT complex subunit SSRP1/POB3
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112231598 (ssrp1b)
03036 Chromosome and associated proteins [BR:
otw03036
]
112231598 (ssrp1b)
Transcription factors [BR:
otw03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG2-related
112231598 (ssrp1b)
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
FACT complex
112231598 (ssrp1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH1_SSRP1-like
Rttp106-like_middle
SSrecog
POB3_N
HMG_box
SSRP1_C
HMG_box_2
HMG_WDHD1
HMG_box_5
Motif
Other DBs
NCBI-GeneID:
112231598
NCBI-ProteinID:
XP_042167952
UniProt:
A0AAZ3SGI5
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All DBs
Position
LG34:8159893..8183342
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AA seq
706 aa
AA seq
DB search
MGDTLEFSDIYQEVKGSWNDGRLRFGRQSVVYKSSKTGKVDSIPAAELSQAQWRRVCLGQ
GIKLTTSTGHIYKYDGFRDTDFEKISEYFKAHYKVELSEKELCVKGWNWGTTKFSGPLLS
FEVSDSPAFEIPLASVSQCATGKNEVTLEFHQNDEAEVSLMEVRFYVPPGDTATTEEGPE
PVEVFRDRVLSKADVIQATGDAVCIFKELQCLTPRGRYDIRIYPSFLHLHGKTFDYKIPY
TTVLRLFLLPHKDQRQMFFMISLDPPIKQGQTRYHFLILLFSKEEDLSLSLNMTEEEVER
RYGGKLSKNMSGSLYEMVGRVMKALVNKKITVPGNFLGHSGTQCITCSYKASSGLLYPLE
RGFVYIHKPPVHLRFEEVSCVNFARGTTTTRSFDFEIETKQGTQFTFSSIEREEYGKLFD
FVTAKKLSIKNRGFKEKKGIKGKDDMLEDSDEDQHDAYLERMKEEGKIREEANDSDDSDG
ESDESFNPGEEEDDIAEEYDSKASASDSSAEGGDSDREKKKRPAKKAKVVKERKPRKKKP
KDSGAPKRPMSAYFLWLNASRESIKAEHPGISITEISKRAGEMWRELGKEQKVEWDGKAE
EAKKDYEVAMREYRESGGGSSAPSKKERKKKGGKSDEKNKKGMSGGGRERERERTTGNDS
FKSREFISSEESSSESDRGKGKRKRKGSDELEEVASTPPSSDSGSD
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgggcgacacactggagttcagtgacatttaccaggaggtcaaagggtcatggaatgac
ggccgtctgcggttcggtagacagagtgtggtgtataagagcagtaagacagggaaggtg
gacagcatcccagctgcggagctgtctcaggcccagtggagacgtgtgtgtctgggacag
ggcatcaagctgaccaccagcaccgggcacatctacaaatatgacggcttcagagacacg
gactttgagaagatctctgagtacttcaaagcccactacaaagtggagctgtcagagaag
gaattgtgtgtgaagggttggaactggggcaccaccaaattctctggccctctcctgtca
ttcgaggtgagcgacagcccagcgtttgagatccccctggccagcgtgtcccagtgcgcc
acggggaagaacgaggtgacactggagttccaccagaacgatgaggcagaggtgtcgctg
atggaggtccgcttctatgtcccgcccggggacactgccaccacggaagaggggccagaa
cctgtggaggtgtttagagaccgtgtgctgtccaaggcagatgtgatccaggctacagga
gatgctgtgtgtatcttcaaagagctgcagtgtctcacgcccaggggcaggtatgatatc
cgtatctacccgagcttcctccacctccacggtaagacatttgactacaagatcccctac
accactgtgctacgtctcttcctgctaccacacaaggaccagagacagatgttcttcatg
atcagtctagacccgcccattaaacaggggcagacacgttaccacttcctcatcctgctc
ttctccaaggaggaggacctcagcctctccctcaacatgacagaggaggaggtggagagg
cgttatggggggaagctcagtaagaacatgtcaggctctctctatgagatggtcggcagg
gtgatgaaggctctggtcaacaagaagatcactgtgcctggaaacttcctgggtcactcg
gggacccagtgtataacgtgttcctacaaagcgtcgtcaggcctgctctatcctctggag
aggggtttcgtctacatacacaagccccccgtacacctgcgctttgaggaggtgtcgtgt
gtgaacttcgccagaggcaccaccaccacgcgctccttcgactttgagatcgaaaccaag
cagggcacccagttcaccttcagcagcattgagagagaggagtatgggaagctttttgac
tttgtgaccgccaagaagctcagcatcaagaacagagggttcaaagagaaaaagggtata
aagggtaaagatgacatgttggaggactcagacgaggaccagcacgatgcctacctggag
aggatgaaagaggagggcaagatcagagaggaggccaatgacagcgatgactccgatgga
gagagcgatgagtcttttaaccctggagaggaggaagatgacatagcggaagagtatgac
agtaaggcatcagccagtgacagcagtgcagaggggggagacagtgacagagaaaagaag
aagagaccagccaagaaggccaaagtggtgaaggagaggaaaccacgcaagaagaagccg
aaggacagtggcgcccccaagaggccgatgagcgcctatttcctgtggctgaatgcgagc
cgcgagagcatcaaagcagagcaccctgggatatccatcacagagatctccaagagggcc
ggggagatgtggagggaactggggaaggagcaaaaagtggagtgggatgggaaagcggag
gaggcgaagaaggactatgaggtagcgatgagggagtacagagagagtggaggaggatcc
tctgccccctccaaaaaggagaggaaaaagaagggagggaagagtgatgagaagaataag
aaggggatgtctggtggagggagggagcgagagagggagaggacgacaggaaacgacagc
tttaagagcagggagtttatctccagcgaagagagctcctcagagtcagacagaggcaag
ggcaaacgcaaacgcaagggttcagatgaactagaggaggtggcctcgaccccacccagt
tctgactcaggatcagactga
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