Oncorhynchus tshawytscha (Chinook salmon): 112231646
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Entry
112231646 CDS
T05605
Name
(RefSeq) lipopolysaccharide-responsive and beige-like anchor protein isoform X1
KO
K24181
lipopolysaccharide-responsive and beige-like anchor protein
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112231646
Membrane trafficking [BR:
otw04131
]
Endosome - Lysosome transport
Others
Others
112231646
Endosome - Golgi transport
112231646
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
112231646
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4704
Beach
DUF1088
NBCH_WD40
PH_BEACH
Neurobeachin
WD40
Laminin_G_3
SUKH_6
Motif
Other DBs
NCBI-GeneID:
112231646
NCBI-ProteinID:
XP_042167753
LinkDB
All DBs
Position
LG34:13686302..14037355
Genome browser
AA seq
2999 aa
AA seq
DB search
MASEETPGAGRPAGQGDGAAAVSLNPGIPIRGIKMKFAVLAGLVEVGEVSNRDIVETVFN
LLVGGQFDLEMNFIIQEKDSIVCMVELLDKCEPTCQAEVWSIFTAILKKSVRNLQACTDT
ALINLVLDRVAHTDSMIADLMVDMLGVLASYSITVKELKLFFSKLQGEKGQWPPHAVKLL
SVLRSMAHRNGPDSFFSFPGKSAAAIALPPIAKWPYQSGFTFHTWLRMDPINNINVDKDK
PYLYCFRTNKGLGYSAHFVCGCLIVTSLKSKGKGFQHCVKYDFKPQKWYMVTIVHIYNRW
KNSEISCYVNGELASYGEITWFVNTSDTFDKCFLGSSETADANRVFCGQMGAVYLFGEAL
SAAQILAIYQLGPGYKGTFKYKAESDLLFAEHHKTLLYDGKLSSGISFSYNPRATDAQLC
LESSPKDNASIFVHSPHALMLQDVKAVVTHSAQSAIHSIGGVQVLFPLFAQLDHLQHTSD
ELDTSVCCTLLSFVMELLKNSVAMQEQVLACKGFLVIGYTLEKSSKVHVTRSVLDIVLAF
ARYLSNLQNGVLLLKQLCDHILFNPAIWIHAPAKVQLVLYTYLSTEFISTVTIYNAIRRV
GTVLQVMHTLKYYYWVVNPQDRSGVTPKGLDGPRPNQKEIHSLRAFLLLFVKQLIMKDYG
VKEDELQSILNYLLTMHEDDNLMDVLQLLVALMSEHHGSMVQAFDQRNGVRAIYKLLASN
SEGIRVQALKVLGYFLKHLPAKRKSEVMLGHGLFSLLNERLMLHSNQFSMTTYNVLFEIL
TEQICTQVIHKQHPDPDSNVKIVNPQVLKVIAALLKNSPLSPESMEVRRVFLSDMIKLFN
NSKDNRRSLLQCSVWQDWMLSLCFINPKSSEEQKVTEMVYAIFRILLYHAIKYEWGGWRV
WVDTLSITHSKVTFEQHKENLARMFRQYQRLGSEGDAAGIRTISGASRDSEILGQLRTNR
DQEEETAPSTVIELTIDPEGVPQNQESPNTTPPSATSASASTPSPPEREGDRSRRGQAPI
TVSNMLARAGEEEEEELQQVQNQISEDQRGGAGDRAEATPQETEAKLTGDKVSSKTVEAM
AETETATDKTDEAAAASTAETDEATRPETEDAKVANSETSDDAKTSDTDKVVRPQTDGEK
GSETHSYKASNVLMSEDSLNEPKESELAKQPEEQVSAAISACQEGSVAEGSAVGASVQSV
SDQVRPSSTDDSMEESSFVSAAGGEEEENEEEEVKTEEVVVEEEKMEEVKAEEIKTEVKT
GKEKEEESVAEVTKSAVESRATPPASVPEESQTQPPKMEEIDLDPSAPGTDPASTVPARQ
PLESTTSPPRALEAILPPAAVGATVSKSDTSQAVAPAEAPSTKAVQPEAPQASGTTEAPS
SRTETSPKVATATAVEAGKDSAAEGPGSATKTKEIHIARLDVSSVASDTERLALKETSTP
EVPQGDAAAAGASGGQASESSSSARSTMFRIPEFRWSHMHQRLLTDLLFSIETDVQMWRS
HSTKTVMDFVNSSENVVFVHNTVHLISQVMDNLIMACGGILPLLSAATSSSHDLENIEPS
QGLSVEASVTFLQRLINLVDVLIFASSLNFTEIEAEKNMSSGGILRQSLRLVCAMAVRNC
LECQQQSHFKPSQDSARGQQAVHSLMGAAKSMPAQSPVDVVTGGMSPIRDMDRLLQEMDI
NRLRAVVFRDIEDSKQAQFLALAVVYFISVLMVSKYRDILEPQNDKKLPQRSQSARSADS
NAVSGGPDLESSVSLRRRDSGIGDDHSSVAPSEADTTAQGPDAVSEALSTLSSEVRGHRD
NPTADARGGKNVKDILRSLVSAPADDITVDPSLLPPAFLGAAMGNNPNQFRSFDRSVRVA
PKKVGGAPSPGSSTPVPSATAAVGAAGTPVNNVAVVSTGDASQSTTAEAAAGSASTNLPS
VPTLSPMTRDTAPSMSISERLEHALDKAAPLLREIFVDFAPFLSRTLLGSHGQELLIEGT
SLVCMKSSSSVVELVMLLCSQEWQNSIQKNAGLAFIELVNEGRLLSHTMKDHLVRVANEA
EFILSRQRAEDIHKHAEFESHCAQYSAEKRDEEKMCDHLIRAAKYRDHVTATQLIQKIVN
ILTDKHGAWGSSAFSRPREFWRLDYWEDDLRRRRRFVRNPFGSTHSKATLKAAAEHVVPG
INAPEEDILKGKQSIRSHAMGNQNSESEILLDGDDDTLSSLEEKELENLTGPVNMSTSAQ
LVAPAVVVKGTLSITASELYFEVDEDEASFKKIDPKILTYTEGLHGKWLFTEIRAVFSRR
YLLQNTALEIFMANRTAVMFNFPDAGTVKKVVQCLPRVGVGTNFGLPQTRRISQASPKQL
YKASNMTQRWQRREISNFEYLIFLNTISGRTYNDLNQYPVFPWVITNYDTEDLDLTLPSN
YRDLSKPIGALNPKRAAFFNNRYESWEDDQVPKFHYGTHYSTSSFTQMWLLRIEPFTTMF
LNFQGGKFDHADRTFSSVSRAWRNCQRDTSDVKELTPEFYYLPEMFVNTNNYSLGVMEDG
TVVSDVELPPWAKTPEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEATRSLNVFY
YLTYEGTINLSSITDPMLREAVEAQIRSFGQTPCQLLIEPHPPRSSAMQVSPLMFTEQMQ
QDVIMVLKFPSNSPVAHVAANTQPGLATPAIITVTANRLFAVNKWHGLAGHQGSSVQDQQ
YQLPVEIDPLIASNVGTHRRQITDLLDQSIHIHSQCFIITADNRFILLCGFWDKSFRVYS
TDSGKLTQIVFGHRDVVTCLVRSESYIGGDCYVLSGSRDATLLLWYWNGKHRSIGENPGT
EFVTPRAILTGHDCEVTCASVCAELGLVISGCREGPCLIHSMNGDLLRTLEGPGGCSQPR
LIQSSTEGHAVVYYDKGHFCFFSINGKLLGHMEVEENIRAMLLSRDGQYLLTGGDGGVLS
VWQVHNLKQMFTYPGCDAGIRSMAMSNDQRCIITGMASGSIVLFYNDFNRWHHEYQTRY
NT seq
9000 nt
NT seq
+upstream
nt +downstream
nt
atggctagcgaggagacgcctggtgctgggcgaccagccgggcaaggtgatggagctgcg
gcggtgtcgctcaaccctgggatccctatccgaggaatcaaaatgaaattcgctgtcctc
gccggcctggtggaagttggggaagtttccaaccgggacattgtggagaccgtcttcaac
ctgttggtggggggccagtttgacctggagatgaacttcattatccaggagaaggacagc
attgtgtgcatggtggagctgctggacaagtgtgagcccacttgccaggctgaggtgtgg
agcatcttcacggctatcctgaagaagagtgtgaggaacctgcaggcctgcaccgacacg
gccctcatcaacctggtcctggaccgcgtggcccacactgacagcatgatcgcagacctg
atggtggacatgctaggagtgctggccagctacagcatcacagtcaaggagctgaagttg
ttcttcagcaaactgcaaggagagaaaggccaatggcctccccatgcggtgaagctgctg
tctgtcctgaggagcatggcccaccggaacggacctgactccttcttcagcttcccaggg
aagagtgctgctgctatagctctgccccctatagccaaatggccgtaccagagtggattc
accttccacacgtggctccgcatggatccaatcaacaacatcaatgttgacaaggacaag
ccttacctgtactgttttcgcaccaacaaaggtctgggatactctgcacactttgtgtgc
ggctgtttgattgtgacctcgttaaagtccaaggggaagggattccagcactgtgtgaaa
tatgacttcaaaccacagaagtggtacatggtgaccatcgttcacatctacaaccgctgg
aagaacagtgagatcagctgctacgtcaatggagagctcgcctcctacggagaaatcacc
tggttcgtcaacaccagcgacactttcgacaagtgtttcctgggttcgtcagagacggcg
gacgccaaccgtgtgttctgtggtcagatgggggcggtgtatctgtttggcgaggccctc
agtgcagcccagatcctggccatctaccagctggggcctggttacaagggcacgttcaag
tacaaggctgagagtgacctcctgtttgctgagcaccacaagaccctactgtacgacggc
aagctgtcctctggcatctccttctcctacaacccccgcgccaccgacgctcagctgtgc
ctggagtcctcccccaaggacaatgcctccatcttcgtccactcgccacacgcactcatg
ctgcaggatgtgaaggctgtggtgacccactcggcccagagtgccatccactccatcggg
ggagtgcaggtcctcttccccctgtttgcacagctggatcacctccagcacaccagcgat
gaactggacacctctgtctgttgcactttgctgtcctttgtgatggagctgctgaagaac
tctgtggctatgcaagagcaggtcctggcctgcaagggcttcctggtcatcggttacacc
ctggagaagtcttccaaggtgcatgttactcggtccgtgctggacatcgtgctggccttc
gcccgttacctcagcaacctgcagaacggcgtcctgctgctcaagcagctgtgtgaccac
atcctgttcaaccctgccatctggatccatgcccctgccaaggtgcagttggtgttgtac
acctacctgtcgaccgagttcatcagcacggtgaccatctacaacgccatccgcagggtg
ggcacagtactgcaggtcatgcacacgctcaagtactactactgggtcgtcaacccccag
gaccgcagcggagtcacgcccaagggcctcgacggtccgagacccaatcagaaggagatc
cactctctcagagcttttctgctgctgtttgtgaaacaactcataatgaaggattacgga
gtgaaggaagatgagcttcagagtattctcaattacctgctcaccatgcatgaggacgac
aatctaatggatgtgcttcagctgctggtggctctgatgtcggagcatcacggctccatg
gtgcaggcctttgatcagcgcaacggagtacgggccatttacaagctgctggcttccaac
agtgaaggaatcagagttcaggcactcaaagtcttgggctacttcctcaaacacttgccc
gctaagaggaagtcagaggtcatgctgggtcacgggctcttctccctgctcaacgagcga
ctgatgctccactccaaccagttcagcatgacaacctacaacgtgctcttcgagatcctg
accgagcagatctgcactcaagtgatccataaacagcatccggaccccgactccaatgtg
aagattgtcaacccgcaggtcctgaaggtgatcgctgccctgctgaagaactctcccctc
tccccagagagcatggaggtgcgcagggtcttcctgtcagacatgatcaaactgttcaat
aacagcaaagataacaggaggagcctgctgcagtgctctgtgtggcaggattggatgctc
tctctgtgcttcatcaaccccaagagcagcgaggagcagaaggtcactgagatggtgtac
gccatcttccgcatcctgctctaccacgccatcaagtacgagtggggcggctggcgcgtg
tgggtggacaccctgtccatcacccactccaaggtgacctttgagcagcacaaggagaac
ctggcccgtatgttccgtcagtaccagagactgggctccgagggcgatgcagctggtatc
cggaccatttccggggccagccgagactctgagattctgggccagctccggaccaacagg
gatcaggaggaggagactgccccctccaccgtgatcgagctcaccattgacccagagggg
gtcccccagaaccaggagtcccccaacactacccctccctcagcaacctcagcatctgct
tccacccccagccctccagagagagaaggagatagaagtcggaggggtcaagcacccata
actgtgtccaacatgctggccagagctggagaagaggaggaggaggaactacagcaggtc
cagaatcagatctctgaggatcagagaggaggtgctggtgacagagctgaagctactcca
caggagactgaagctaaacttactggggataaagtcagcagtaagaccgttgaggccatg
gctgagactgagacagccacagacaagactgatgaagctgcagcagctagcacagctgaa
acagacgaagcgaccaggccagaaactgaagacgcgaaggtggctaactcagaaacaagc
gacgatgctaaaacatctgataccgacaaagtagttagacctcaaacggatggagagaag
gggtcagaaacgcacagctacaaagcctccaacgttcttatgtctgaagattccctgaac
gaacccaaggaatcggaactggcaaagcaaccggaggaacaggtctctgctgccatctcg
gcctgccaggagggcagcgtggcggaggggtcagcggtcggggcatctgtccagtcagtc
agtgaccaggtccgacccagctccaccgacgacagcatggaggaatcctcttttgtctcc
gccgctggtggagaggaggaagaaaatgaggaagaggaggtgaagacagaggaggttgta
gttgaggaggagaagatggaagaggttaaagcagaggagatcaagacggaggttaaaact
ggaaaggagaaggaagaggagagtgttgccgaggtcacaaagtcagcagtggaaagtcga
gcgacaccacctgcttctgtacctgaggagagtcagacacaaccccctaaaatggaggag
attgaccttgacccgtctgcaccaggcaccgaccccgccagcacagtgccagcacggcag
cctttagagtccacaacatcgccccctagagccctggaggccatactaccaccagcagca
gtaggagccactgtctctaaatctgacacctcacaggctgtagcaccagcagaggccccc
agcaccaaggcggtccagccagaagccccacaggcctcagggaccacagaggcccccagc
agcaggactgaaacctctccgaaggtagccactgctactgctgtggaggcagggaaagac
agtgcagcagagggccctggctctgccaccaagaccaaagagatccacattgccaggctg
gatgtgtccagtgtggcctcagacacagagagactggctctaaaggagacctccacacct
gaagttcctcagggcgacgcggctgcagccggtgcctcaggaggccaggccagcgagagc
agctcctccgctcgctccaccatgttccgtattccagagttccgttggtctcacatgcac
cagcgcctgctcacagacctgctcttctccatcgagactgacgtgcagatgtggaggagt
cactccactaagacggtgatggactttgtgaacagcagtgagaatgtggtgtttgtccac
aacacagtgcacctcatttctcaggtgatggacaacctcatcatggcctgtggaggcatc
ctgcccctgctttctgctgccacatcctcctcacatgatctggagaacattgagccgtcc
cagggtctgtcggtggaggcgtcggtcaccttcctgcagcgcctcatcaacctggtggat
gttctgatcttcgcctcctccctcaacttcaccgagatcgaggctgagaagaacatgtcc
tctggcggtatcctcagacagagcctccgcctggtgtgtgccatggctgtgaggaactgt
ctggaatgtcagcagcagtctcacttcaagcccagccaggacagcgcccgcggccagcaa
gccgtgcacagcctcatgggagctgccaagtccatgcccgcgcagagccctgttgatgtt
gtgacaggagggatgtctcccatcagagacatggaccgtctgctacaggaaatggacatc
aaccgcctcagagccgtggtcttcagagatatcgaggacagtaagcaggctcagttcttg
gccctggctgtggtttacttcatctctgttctcatggtgtccaagtaccgagacatcctg
gagccccaaaacgacaagaaactcccccagcgcagccagtctgccaggagcgcagacagt
aatgccgtctctggcggtcccgacctggagagcagtgtgtccctccgtcgccgagactct
ggcatcggggatgaccatagctccgtggcccccagcgaggcggacaccaccgcccagggg
cccgacgccgtgtccgaggccctgtccaccctctcctcagaggtcaggggtcacagagac
aaccccacggcagacgccaggggcgggaagaacgtgaaggacatcctgcgcagcctggtc
tcggcgcctgctgatgacatcacggtggaccccagccttctgccgccggccttcctggga
gctgcgatgggaaacaaccccaaccagttcagatcctttgacagaagcgttcgggtggcg
cccaagaaggttggcggggctccgtccccaggctcctccactcctgtcccatcagccacc
gctgctgtgggggccgccgggacaccagtcaacaacgttgccgtggtttccacgggcgat
gcctcccagagcaccaccgctgaagctgcagccggatcagccagcaccaacctgccatct
gtccccacgctgtccccaatgacccgggacacagcccccagtatgagtatctcagagagg
ctggagcatgctctggataaggctgcccccctactgagagagatctttgtggactttgcc
cccttcctctctcgcaccctgctgggtagtcacggacaggagctcctcatcgagggcacc
agtctggtgtgtatgaagtccagcagttcggtggtagagctggtcatgctgctctgttct
caggagtggcagaactctatccagaagaacgccggcttggccttcatcgagctggtcaac
gagggcaggctactaagccacaccatgaaggaccacctggtgcgggtggccaatgaggct
gagttcatcctgagccgtcagagagccgaggacatccacaaacacgctgagtttgagtcc
cactgtgcccagtactcggctgagaagcgtgatgaggagaagatgtgcgaccacctgatc
cgagcggccaagtaccgcgaccacgtgacagccacccagctcatccagaagatcgtcaac
atcctgacggacaaacacggtgcctggggaagctctgccttcagccgtcctcgggagttc
tggcgcctcgactactgggaggatgacttgaggcggcgccggcgcttcgtcaggaacccc
ttcggatccactcactcaaaggccacgctcaaagctgcagccgaacacgtggtgcctggc
attaatgctccggaggaagatatcctcaaaggcaaacagtccatcagaagtcacgcgatg
ggaaatcagaactctgagagtgagatattgttggatggcgacgatgacactctatcatcc
ttggaggagaaggaattggagaacctaacaggccctgtaaacatgagcactagcgctcag
ctggtcgccccggcggtggtggtgaaaggaacgctgtccatcactgcatctgaactctac
ttcgaggtggatgaagatgaggccagctttaagaagatcgatccaaagatcctaacctac
acagagggccttcatggtaaatggctgttcacagagatcagggctgtcttctccagacgt
tacttgctacagaacactgctctggagattttcatggccaacagaactgcggtcatgttc
aacttcccagatgcaggcacggtcaagaaggtggtccaatgcctccctcgcgtgggggtg
ggcaccaactttggcctcccacagaccaggcgtatctcccaggccagtcccaagcagctc
tacaaggcctccaacatgacccagcgctggcagcgcagagagatctccaactttgagtac
ctgatcttcctcaacaccatctctggtcgtacgtacaatgatctgaatcagtaccccgtc
ttcccctgggtcatcacgaactacgacactgaagacctggacctcactctgcccagcaac
tacagagacctgtccaagcccattggtgccctgaaccccaagagggcggcgttcttcaac
aaccgctatgaatcctgggaggacgaccaggtgcccaagttccactacggaacccactac
tccacctcctccttcacccagatgtggctgctgcgcatcgaacccttcaccaccatgttc
ctcaacttccagggagggaagtttgaccatgctgaccgcaccttctcctccgtgtcccga
gcctggaggaactgccagagagacacgtccgatgtcaaggagttgaccccagagttctac
tacctccctgagatgtttgtaaacaccaacaactacagcctgggggtgatggaggatggg
actgtggtgtctgacgtggagctaccgccctgggccaagacccccgaggagtttgtacgc
atcaacagactggctctggagagtgagtttgtgtcgtgccagctgcaccagtggatcgac
ctgatctttggctacaagcagcagggtcctgaggccaccaggtctctcaacgtcttctac
tacctgacctatgaagggaccatcaacctcagctccatcaccgaccccatgctcagagag
gctgtggaggcacagatcaggagttttggacagaccccatgtcagctgctcatcgagcca
cacccaccaaggagctccgccatgcaggtgagcccgttgatgttcacggagcagatgcag
caggatgtcatcatggtgttgaagttccccagcaactctcccgtggcccacgtggccgcc
aacacccagccgggcctcgccacgcccgccatcatcaccgtcaccgccaaccgcctcttc
gccgtcaacaagtggcacggcctggccggtcatcaaggctcctctgtgcaggaccagcag
taccaactgcccgtggaaatagaccccctgatagccagtaatgtggggacccaccgtcgt
cagatcacagacctgttggaccagagcattcacatccactctcagtgtttcatcatcact
gcagacaaccgcttcatcctgctctgtggcttctgggacaagagcttccgcgtctattcc
actgactcagggaagctgacccagatagtgtttggtcaccgtgacgtggtgacgtgtctg
gtcaggtctgagtcgtacatcggaggggactgctacgtcctgtcaggctccagagacgcc
acgttactgctctggtactggaacggaaaacacagaagcatcggagagaaccccggaact
gagtttgtgacgcccagagccattctgacgggtcatgactgtgaggtgacctgcgccagt
gtgtgtgccgagctgggactggtcatcagtggctgcagagagggcccgtgtctgattcat
tccatgaatggggacctgctgcggaccctggagggcccggggggctgctcgcagccccgt
ctcatccagtcctctacagagggccacgccgtagtctactacgacaagggacacttctgc
ttcttctccatcaacggaaagctgctgggacacatggaggtggaggagaacatcagggcc
atgctgctgagtcgggacggacagtacctgctaacggggggagacgggggagttctgtct
gtctggcaggttcacaacctcaaacagatgttcacctaccctggctgtgacgcaggcatc
cgctccatggccatgtccaatgaccaaaggtgcatcataaccggcatggcgtctggtagt
atagtcctgttctacaacgacttcaacaggtggcaccacgagtaccagaccagatactga
DBGET
integrated database retrieval system
