Oncorhynchus tshawytscha (Chinook salmon): 112231663
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Entry
112231663 CDS
T05605
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112231663
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
otw03041
]
112231663
03009 Ribosome biogenesis [BR:
otw03009
]
112231663
Enzymes [BR:
otw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112231663
Spliceosome [BR:
otw03041
]
Complex A
U2 snRNP components
U2 related factors
112231663
Complex B
112231663
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
112231663
Ribosome biogenesis [BR:
otw03009
]
Eukaryotic type
90S particles
Helicases
112231663
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_25
nSTAND3
SRP54
Flavi_DEAD
AAA_29
Atrophin-1
Motif
Other DBs
NCBI-GeneID:
112231663
NCBI-ProteinID:
XP_024254130
LinkDB
All DBs
Position
LG34:549540..562321
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AA seq
763 aa
AA seq
DB search
MSKRHRLDLGDDYSNKKRSDGKDRDRDRDRDERSKDRERDRDRDRDRDRDRDRDVKPSVV
PPNTMMAVGGMLPLKQTAMQQQINPFTNLPHTPRYYEILKKRLQLPVWEYKERFNDILAR
HQSFVLVGETGSGKTTQIPQWCVDMVKGLGGPKKAVACTQPRRVAAMSVAQRVADEMDVM
LGQEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDIL
MGVLKEVVRQRSDLKVIVMSATLDAGKFQVYFDSCPLLTIPGRTHPVEIFYTPEPERDYL
EAAIRTVVQIHMCEEEEGDCLLFLTGQEEIDEACKRIKREIDDLGPEVGDIKVIPLYSTL
PPQQQQRIFEAAPPRKPSGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIR
VESLLVTAISKASAQQRAGRAGRTRPGKTFRLYTEKAYKTEMQDNTYPEILRSNLGSVVL
QLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLA
KMVIASCEFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYH
AFKQNHESTQWCYDNFVNYRSLMSADNVRSQLSRIMDRFNLPRRSTEFTSRDYYINIRRA
LVTGFFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCSD
IKPEWLVKVAPQYYEMGNFPQCEAKRQLERIVAKLQTKEYSQY
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaagacaccgtttagatttaggcgacgactactccaataaaaagagatctgat
gggaaagacagagatcgcgacagggaccgtgacgagcgctctaaagacagggagagggac
agggaccgcgacagagatcgggacagggaccgagatagggacgtgaagccctctgtcgtg
ccccccaacaccatgatggccgttggaggcatgcttcctctcaagcagacagccatgcag
cagcagatcaacccgttcacaaacctgccccacacaccacgctactatgagatcttgaag
aagaggctgcagctgcctgtgtgggagtacaaggagcgcttcaacgacatcctggcacgc
caccagagctttgtgcttgtcggagagacgggctctgggaaaaccacacagatcccccaa
tggtgtgtggacatggtgaagggcttgggtggccccaagaaggcagtggcctgtacccaa
cccagaagggtggcagccatgagcgtggcccaaagggtggccgacgagatggatgtcatg
ctgggccaggaggtgggctactccattcgatttgaggactgcagctccgccaagactata
ctgaagtatatgacagacggtatgttgcttcgggaagccatgaacgaccccttgctggag
cggtatggcgtgatcatcctggatgaggcccacgagagaacgctggccacggacatccta
atgggagtattgaaggaggtggtccgacagaggtcagacctcaaggtgattgtgatgagt
gccacattagacgccgggaagttccaagtgtactttgacagctgtccgctgctgaccatt
cccggacgcacacaccccgtggagatcttctacacccctgagccggagcgggactacctg
gaagccgccatccgcacggtcgttcagatccacatgtgtgaggaagaggagggggactgt
ctgctgttcctcaccggacaagaggaaattgacgaggcctgtaaacggatcaaacgggag
atcgacgacttgggacctgaagtcggggacatcaaagtcattccactatattccacactg
cctccccagcagcaacaaagaatctttgaggccgcaccacccaggaagcccagcggtgcg
ataggaagaaaggttgtggtttcgacaaacattgctgagacatcccttaccatcgacgga
gtggtgtttgtgatcgatcccggttttgccaagcaaaaggtgtacaatcctcgtatcagg
gtggagtctctcctggtaacggcgatcagcaaagcctcggcgcagcagagggcgggccgt
gccggcaggacacggccagggaagactttccgcctctacactgagaaagcctacaagacc
gagatgcaggacaacacgtatcctgagattctccggtccaacttgggttctgtcgtgttg
cagttgaagaagctgggtatcgatgacctggtgcactttgacttcatggacccaccagcc
ccggagaccctgatgcgggcgctggagctgctcaactacctggcggcactcaacgacgac
ggcgacctgacagagctgggctccatgatggcagagttcccgttggacccacagctggcc
aagatggtgatcgccagctgcgagttcaactgctccaacgagatcctctccatcaccgcc
atgctgtcagtcccgcagtgtttcgtccgccctaccgaggctaagaaggcggcggacgag
tccaagatgcggttcgcccacatcgacggagaccacctgacactcctcaacgtctaccac
gccttcaaacaaaaccacgagtctacacagtggtgctacgacaactttgtgaactaccgt
tcgctgatgtcggccgacaacgtgcgctcgcagctgtcccggatcatggaccgcttcaac
ctgccccggcgcagcaccgaattcaccagcagagactactacatcaacatccgccgagcg
ctagtcacaggctttttcatgcaggtggctcatttggagcgcactggccattatctcaca
gtcaaggacaaccaggtggtccagctacacccctctaccgtcctggaccacaagccagag
tgggtgctctacaatgagtttgtcctcacaaccaagaactacattcgcacctgctctgat
atcaaaccggaatggctggtgaaggttgctcctcagtactacgaaatgggcaacttccca
cagtgtgaagccaagaggcagttggagcgaatcgttgccaaactccagaccaaggagtat
tcccagtactga
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