Oncorhynchus tshawytscha (Chinook salmon): 112231787
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Entry
112231787 CDS
T05605
Name
(RefSeq) probable E3 ubiquitin-protein ligase HERC3
KO
K10614
E3 ubiquitin-protein ligase HERC3 [EC:
2.3.2.26
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
112231787
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
otw04121
]
112231787
Enzymes [BR:
otw01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
112231787
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
HECT type E3
112231787
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
RCC1
RCC1_2
Motif
Other DBs
NCBI-GeneID:
112231787
NCBI-ProteinID:
XP_042167719
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All DBs
Position
LG34:6058840..6068648
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AA seq
1012 aa
AA seq
DB search
MISWGEDSRNGFGLVKPNGLDTTKTDISCVNLIHLKSKIQGLSAGNSVVAFIRNNGRLVS
VARIQEDLDGRRFTGKLKSVTCKERIRALSCGDSHAVLLSEEGRVLCLDKANILSPLGNL
CNRQVTQVACGDQHSILLTQDGQVFTWGQNTSGQLGLGWSEPRDMSMSPKPLKSLSGIPL
VQITAGGDHSFALSLSGAVFGWGKNTAGQLGLGDTTNRCAPAPVDCLNLKKTVLISCGGE
HTAVLTKGGVVFTFGSGRYGQLGHNSLRDELRPRVVGQLCGLKVTQIACGRHHTLAFVGP
SNKIYSFGHGEQGQLGNGVKIDQSVPLPVQLPDQIDDQKIEHIFAGGNHSFALCSLGQES
EEKSNNLRSSVGKVTQQAIDEEIIDKWISECDSKSWKKGQKEITKMFSSASCLNGSFLDK
SCDKHYQTSPKQSGLDYSLVQGAFRKLAKRAKFVEAVVQHTLLPSLYEEPIGVEGLRVYL
VLPELLRVIHKQHRRTDLTEAVAAAILRLHPEKLQVLGDCWSSLKPSVMTKHIGVWKKAL
SGILRSEHILHTRDTGIKHLLQVLGHLHRANQKSVETQTVPDSTFCMEEVHFNPKFLEED
VKLWRLWSKQDVDQTPAIFCRYPFLMNLQSKINVFNINAALTKNLPNNRQRTGMWRFDMF
LVAEPAPVFELRLNRASLIEDTFHQLSVAYHSTFKRSLVVYFDEDAKLTNVYKRDFFLHL
FDKLLVPESGMFMYNDTNTLAWFPAMPRVEEKRYFLFGVLCGMALYNNNMVHLPFPMAFF
KKLVNINPSLEDLREFSPIEAGSLQYILDYPDDDVENMDMTFSVMWGDVAVELDPKETGK
LVTSANKKEFVDTYVNYIFNQSVEVVFEEFRKGFFKVCDKDVVEFFQPEELRGVMVGQEN
FDWETLKQNTVYEGEYHAGHPNIVTFWEVFEELTEDQKKAFLLFLTGCDRVPILGMNQIR
MRVQTLLNSSQQHFPEALTCHSLLQLPIYSSKETLQSRLIEAVGHNRGFWNE
NT seq
3039 nt
NT seq
+upstream
nt +downstream
nt
atgatttcatggggagaggatagtcgtaatggctttggtttagtgaagccgaatggttta
gatacgaccaaaacggatattagttgcgttaatttgatacaccttaaatctaaaattcag
ggtctgtccgcaggtaacagtgtggtcgcgtttatcagaaataatgggagactagtgtct
gtcgcacggattcaagaggacctagatgggagaagattcacagggaaactgaagagtgtg
acatgtaaggagaggattcgggctctgagttgtggagattctcatgctgttttactgtct
gaagagggtcgggttctctgcttggacaaagccaacattctcagcccattgggtaaccta
tgtaaccgacaggtaactcaggttgcatgtggagaccagcattcaattttactaactcag
gatggtcaggttttcacatggggtcagaacaccagcggtcagctgggtttggggtggagc
gagccacgcgacatgtccatgtcccccaagcccctgaagtctctatcagggatccccctg
gttcagatcactgcagggggagaccacagcttcgctctgtccctttctggagctgtgttc
ggctggggcaagaacaccgccgggcaactgggactaggggacacaacaaacagatgtgcc
ccagctcctgttgattgcctgaatctgaagaagactgttttgatttcatgtggaggagaa
catactgccgttctgacaaagggaggtgtggtgttcacatttggttcaggccgctatgga
cagcttggacacaactctctccgagatgaactacgacctcgagtggtggggcaactttgt
ggattaaaggtgacccagatagcctgtggaagacaccatacattagcatttgtggggccc
tccaataagatctactcatttgggcacggagagcaagggcagctgggaaatggagtaaag
attgatcagtctgtgccccttccagtacaactgccagaccagattgatgaccagaaaatt
gaacacatttttgctggaggaaaccattcctttgcgttgtgctctcttggtcaggagtct
gaagaaaagtctaacaatctcaggtcaagtgtgggcaaagtgacacaacaagctatagat
gaagaaatcattgacaaatggatctcggaatgtgattcaaagtcttggaaaaaaggacag
aaggaaatcacaaaaatgttttcttctgcatcgtgtttaaatgggagctttcttgataaa
agttgtgacaaacattaccaaacctcaccaaaacagtctggcctggattattcactcgtc
caaggcgcattccggaagctggcgaaaagggcaaagtttgttgaagctgttgttcagcac
acactacttccctccctgtatgaggagcccattggagtggagggcttgagggtctacctg
gttctccctgagctcctgagggtcattcacaaacagcacagaaggacagatctcaccgaa
gccgttgctgctgctatcctcagactgcaccctgaaaagctgcaggtcctcggtgactgc
tggtcctcattgaagccgtctgtcatgaccaagcacattggggtgtggaagaaagccctg
tcggggattctgaggagtgaacatattctacacactcgtgatactgggatcaagcacctg
ctccaggtcctcggccatctccacagagcaaaccagaaatctgtagagacccagactgtt
ccagacagtaccttttgtatggaggaggttcacttcaatcccaaatttctagaggaggat
gtaaagctttggcgtttatggtcaaagcaggatgtggatcagacacctgccatcttttgt
cgttacccattcttgatgaatctgcagagcaagataaacgtttttaacatcaacgccgca
ctcacaaagaatctccctaacaatcgccaaaggactggcatgtggcgttttgacatgttc
ctcgtggcggagcctgctccggtctttgagctgagactgaatagagcatcactcatagaa
gacactttccatcaactgagtgtagcatatcacagtaccttcaagaggtcccttgtggtg
tatttcgacgaggatgcgaagctgacaaatgtctacaaaagggacttcttcctccatttg
tttgataagctgttggtacccgagtctgggatgttcatgtacaacgacaccaatacgctg
gcctggttccctgcaatgcctagagtggaggagaagcgttatttcctgtttggggttctg
tgtgggatggccctgtacaacaacaacatggtgcacctccccttccccatggccttcttc
aagaagctggtgaacatcaatccctctttagaggacctgagagagtttagccccattgaa
gcagggagtttgcagtacatcttggattaccctgatgatgatgttgaaaacatggacatg
actttctcagtgatgtggggtgatgtagcggtggaacttgatcccaaagaaactggaaaa
ctcgtcacaagtgccaacaagaaggagtttgttgacacctatgtgaactacatcttcaac
cagtcagtagaggtggtgtttgaagagttcaggaaaggcttcttcaaggtgtgtgacaag
gacgtggtggagttcttccagccagaggaactgaggggagtgatggtggggcaggagaat
ttcgactgggaaacactgaaacagaacactgtgtatgaaggagagtaccatgctgggcat
cccaacatcgtcacattctgggaggtgtttgaggaactgacagaggatcaaaagaaagcg
ttcctgttgttcctgactggctgtgatcgtgtgcccatcctgggtatgaaccagatcagg
atgagggtccaaacccttctcaactcctcccaacagcatttcccagaggcgctgacctgt
cactctctgttgcagctgcccatctactcctccaaagagacactacagagcaggcttata
gaagctgttggccacaacagaggcttctggaatgaataa
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