Oncorhynchus tshawytscha (Chinook salmon): 112231832
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Entry
112231832 CDS
T05605
Name
(RefSeq) pre-mRNA-processing factor 19
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03040
Spliceosome
otw04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112231832
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
112231832
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
otw03041
]
112231832
04121 Ubiquitin system [BR:
otw04121
]
112231832
03400 DNA repair and recombination proteins [BR:
otw03400
]
112231832
Enzymes [BR:
otw01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112231832
Spliceosome [BR:
otw03041
]
Complex B
Other components
Prp19 complex
112231832
Complex C
Prp19-CDC5 complex
112231832
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
U-box type E3
112231832
DNA repair and recombination proteins [BR:
otw03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
112231832
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR3_1st
Beta-prop_WDR5
Beta-prop_THOC3
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Prp19
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML_2
WD40_Gbeta
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
Beta-prop_WDR75_1st
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_Aladin
Beta-prop_SCAP
NBCH_WD40
Beta-prop_WDR41
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
Beta-prop_Vps41
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
WDR90_beta-prop_4th
Beta-prop_SPT8
PEP5_VPS11_N
Beta-prop_DCAF4
Beta-prop_HPS5
U-box
WD40_RFWD3
Beta-prop_VPS8
Beta-prop_ACSF4
Beta-prop_WDR35_TULP_N
Beta-prop_Nup120_160
Beta-prop_DCAF12
PROPPIN
Cytochrom_D1
B-prop_COPA_B_2nd
Tricorn_2nd
Nucleoporin_N
ATG16
Peripla_BP_2
zf-Nse
Cep57_MT_bd
Motif
Other DBs
NCBI-GeneID:
112231832
NCBI-ProteinID:
XP_024254391
LinkDB
All DBs
Position
LG34:complement(8386124..8394731)
Genome browser
AA seq
505 aa
AA seq
DB search
MSLVCAISNEVPEHPCVSPVSNQVFERRLIEKYIAENGADPMNGQPLSEEQLIDIKVSHP
IRPKAPSSTSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGLVVAQAVASQPHVTAGGAGESMEVSEQVGMIPEIIQKLQDK
ATVLTTERKKRGKTVPEELVRTEDLSKYRQVATHAGLHSASVPGILSLDLCPSDTNKVLT
GGADKNVVVFDKKEEQIIATLKGHTKKVTSVIYHPSQSVVFSASPDSTIRVWSVTGGNCV
QVVRAHEASVTGLSLHATGDYLLSSSEDQYWAFSDIQTGRVLTKVTDEAAGCALTCAQFH
PDGLIFGTGTADSQIKIWDLKERTNVANFPGHIGPVTSIAFSENGYYLATGAQDSSVKLW
DLRKLKNFKTITLDNNYEVKSLVFDQSGTYLAVGGTDIRVYICKQWSEVLNFTEHTGVVT
GVAFGEHAQFLTSTGMDRSLKFYSL
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgtccctggtttgtgcaatatcaaatgaggtcccggagcacccgtgcgtgtcgccggtg
tccaaccaggtgttcgagcggcggctgattgagaagtacatagctgagaatggagcagac
cctatgaatgggcagcctctgtcagaggaacagctgatagacattaaagtctctcacccc
atcagacccaaagctccctcatccactagcatcccagccatcctcaaagctctgcaggac
gagtgggatgcggtgatgctccacagtttcaccttgaggcagcagctgcagacaacgcgt
caagaactaagccacgccctctaccagcacgacgccgcctgcagggtcatcgcccgtctc
accaaggaggtcactgctgccagagaggctctggccactctgaagccacaggcaggattg
gtggtggctcaggcagtcgcttcccagccccatgtcacggctggaggtgcaggagagtcc
atggaggtcagtgagcaggtgggaatgataccagagatcatacagaagctgcaagacaag
gccacggtcctgaccacggagagaaagaagagaggaaagacagttccagaagagctggtc
cgaacggaggacctcagcaagtacagacaagtcgctacccatgctggtctccacagtgcc
agtgtgcctgggatcctgtctctggacctgtgtccctccgacaccaacaaagtgctcact
ggtggggctgataagaacgtggtggtgtttgataagaaggaagagcagatcatcgcaacc
ctgaaaggacataccaagaaggtcacctctgtcatctaccacccctctcagtcggtagtg
ttctcggcctctccagacagcactatccgcgtgtggtccgttaccgggggcaactgtgtc
caggtggtgcgggctcacgaggcgagtgtcaccgggctctccctccacgccaccggagac
tacctgctcagctcctccgaggatcagtactgggccttctctgacatccaaacaggtcgt
gttctcaccaaggtcactgatgaggctgcaggatgtgctctgacctgtgcccagttccac
cctgacggtctgatcttcgggacggggacggccgactctcagatcaagatctgggacctg
aaggagcgcaccaacgtggccaacttccccggccacatcggccctgtcacctccatcgcc
ttctctgagaatggatactacctggctacaggtgcacaggacagctcagtgaagctctgg
gatctgaggaagctgaaaaatttcaaaaccatcaccctggacaacaactatgaggtgaag
tccctggtgtttgaccagagtgggacgtacctggctgtgggtggcactgacatcagggtc
tacatctgtaagcagtggtccgaggtcctcaacttcacagaacacactggggtggtgaca
ggcgtggcctttggggagcacgcccagttcctcacctccactggaatggacaggagcctc
aagttctacagcctgtaa
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integrated database retrieval system
