Oncorhynchus tshawytscha (Chinook salmon): 112232094
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Entry
112232094 CDS
T05605
Name
(RefSeq) liprin-beta-1 isoform X1
KO
K27096
liprin-beta
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112232094
Membrane trafficking [BR:
otw04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
112232094
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAM_1
SAM_2
SAM_PNT
LMBR1
DUF16
Fez1
Spc29
FlaF
WHEP-TRS
Motif
Other DBs
NCBI-GeneID:
112232094
NCBI-ProteinID:
XP_024254659
LinkDB
All DBs
Position
LG06:40622156..40696898
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AA seq
1005 aa
AA seq
DB search
MMSDASDMLAAALEQMDGIIAGSKSMDYSNSLFDCQSPTSPFLGSLRALHLLEDLRGVLE
LMDTEEREGLRCQIPDATADSLVDWLQQGHLMSNGHHISMSGDLYQERLSRLEGDKESLV
LQVSVLTDQVEAQGEKIRDLEMCLDEHREKLNATEEMLQQELLCRTTLETQKLDLMAEVS
NLKLKLNSFEKDILHFDFRDSEDMGLEINELRYKVTEMESERLQYEKKLKSTKSLMAKLS
SLKIKVGQMQYEKQRNEHKLQALKEELVTLRRQLEGRDREVRRLHGETGFRANTPGGMDC
GDRVSHPDETLKKRLKEKHVEVQRMKKAVESLMAANEEKDRKIEELRQSLQRYKKVQDMV
MSVQEKNDKTKDGESDESNSDNFLSVMSTTTTPVALESERHALAGVEEVGVKGPDELETH
YGATEVPSATTRPTVQSACALSVPELNQAEPERSLRVPKSASQENLYVSNSEKITLVIDE
KPTENKAVEDIGKISERPPRSPSSSRPEDDSFGTKKARSSFGRGFFKIKGGKRTASTPNL
AETVREGGTDHLDLAGLPQRSAISDSTNTLTSVTSTTSPEGKKKSRGIKALFGKLRRSQS
TTFNLDDNLSEPVEFKRGGVRATAGPRLGWSRDLQQSPNTDLDTPFARWSKEQVCDWLQE
QGLGLYLNMAHVWISSGQTLLQASQQDLERELGIKHPLHRKKLQLALQALGSEEDDNKGK
LDYNWVTRWLDDIGLPQYKTQFDEGRVDGRMLHYMTVDDLLSLKVGSVLHHLSIKRAIQV
LRLNNYEPNCLRRRPSDENNITPAEISQWTNHRVMEWLRSVDLAEYAPNLRGSGVHGGLM
VLEPRFNVETMALLLNIPPNKTLLRRHLATHFNLLVGSEAQGLKQDYLENPDYTLLTATA
KVKLRKMTFGSFGSLRKKRQDESEEYVCPMDVEMPKGRSFQKGYELYEDDLDRLEQMEDS
EGTVRQIGAFSEGIQNLTSMLKDDEFFKEISNSPNPSVTDDDSNV
NT seq
3018 nt
NT seq
+upstream
nt +downstream
nt
atgatgtctgatgccagtgacatgttggcagcagctttggagcagatggatgggataata
gcagggtccaagtccatggactactccaacagcctgtttgactgccagtcaccaacctct
cccttcttgggaagcctgcgggcactgcacctgctggaggacctccggggcgtgctggag
ctgatggacacggaggagagggagggccttcgctgccagatccctgatgccaccgcagac
agcctggtggactggctgcagcagggacacctgatgtccaatggccaccacatttccatg
agtggtgacctctaccaggagagactgtctcgactggagggtgacaaggaatccctggtg
cttcaggtgagtgtgttgacagaccaggtggaggcgcagggggagaagataagggacttg
gaaatgtgtctggatgaacaccgggagaaactgaacgccactgaggagatgctacaacag
gagctcctgtgcagaacgactctagagactcagaaactggacctaatggctgaggtgtcc
aacttgaaactgaagctgaactcatttgagaaggacatactgcactttgacttcagggac
agtgaggacatgggtctggagattaatgagctgaggtacaaagtgactgagatggagagt
gaaagactacagtatgagaagaaactgaaatccactaagtcgctaatggccaagctttct
agcctgaaaatcaaagtgggccagatgcagtatgagaaacagaggaacgagcacaaactg
caggcactgaaggaggagctggtgacgctgaggaggcagttggagggaagggacagagag
gtgaggaggttacacggcgagactgggttcagagccaacaccccgggtggcatggactgt
ggagacagagtctctcacccagatgaaactcttaaaaagaggctgaaagagaaacatgtg
gaagtgcagagaatgaaaaaagcggtggagtcactgatggcagctaatgaggagaaggat
cgtaagattgaggagctgagacagtcactgcagcgctacaagaaggtccaggacatggtg
atgtcagtgcaagagaagaacgacaaaaccaaagatggtgagagtgatgagagtaacagc
gacaacttcctctctgtgatgtcaacgacaaccaccccggttgccctggagtcggagagg
cacgcgctagctggagtcgaggaagtaggagtgaagggcccagacgagctggagacgcac
tatggagctactgaagtgccttcggcaacaacccgccctacagtccagtcagcctgcgct
ctgagcgtgccagagcttaaccaagctgaacctgagaggtccctgcgtgtcccaaagtca
gcgagtcaggaaaacttgtatgtcagcaacagtgaaaagattacattggtgattgacgaa
aagccaacagagaataaggctgtggaggacatcggtaagatcagcgagcgcccgcccagg
tctccctcttcatctcgcccagaggacgacagcttcggtaccaagaaggctcgctcctcc
tttggccgaggcttcttcaagatcaaggggggcaagaggacagccagcacccctaacctg
gctgagaccgtgcgagaggggggcactgaccatctggacctggccgggctaccccagagg
tcagccatcagtgacagcaccaacacactgaccagtgtgacctccactacctctcccgag
ggcaagaagaagtccaggggaatcaaggcactctttggaaagctgaggagaagtcagtcc
accacattcaacctggatgacaacctatcagagccggtcgagttcaagagaggcggagtc
cgggccacagcaggacccagactgggatggtcccgggacctacagcaatcacccaacact
gacctggacaccccgtttgcccgctggtccaaggagcaggtgtgtgactggctgcaggag
cagggactggggctctacctgaacatggcccacgtgtggatctcttctggacagactctg
ctgcaggcctcacagcaggatctagagagggagctgggcatcaaacaccctctgcacagg
aagaagctccaactggccctgcaggctctgggctctgaggaggatgacaataagggcaaa
ctggactacaactgggtgaccagatggctggatgacattggcctgcctcagtataagacc
cagttcgatgaagggagggtggacggccgcatgctgcactatatgacagtagatgacctg
ttgtctctgaaggtgggcagtgtgctccaccacctcagcatcaaaagagccatccaggtg
ctacgcctcaacaactacgagcccaactgcctgcgccgacggccctccgatgagaacaat
atcacaccagcagagatctcccagtggaccaatcacagagtaatggagtggctgagatca
gtagacctggcggagtacgcccccaacctgaggggcagcggcgtgcacgggggactcatg
gtgctggagcctcggttcaatgtggagaccatggccctgctgctgaacattccccccaac
aagaccctgctgcggaggcacctggccacccacttcaacctgctggtgggatctgaggcc
caggggctcaaacaggattatctagagaaccctgactacaccctgcttacagccaccgcc
aaggtcaagctgaggaagatgacatttgggagctttggcagcctgagaaagaagaggcag
gatgagagtgaggagtatgtctgccccatggacgtggagatgccaaagggacgtagcttc
caaaaaggctatgagctctacgaggacgatctggaccggctagaacagatggaggactcc
gagggaactgtgaggcagattggagccttctctgagggcatccaaaacttgacgagcatg
ctgaaagatgatgaattcttcaaagagatctctaactctcccaaccccagcgtaacagat
gacgattccaacgtttga
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