Oncorhynchus tshawytscha (Chinook salmon): 112232226
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Entry
112232226 CDS
T05605
Name
(RefSeq) cadherin-5 isoform X1
KO
K06533
cadherin 5, type 2, VE-cadherin
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04514
Cell adhesion molecule (CAM) interaction
otw04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
112232226
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
112232226
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
otw04515
]
112232226
04090 CD molecules [BR:
otw04090
]
112232226
Cell adhesion molecules [BR:
otw04515
]
Cadherins
Major cadherins
112232226
CD molecules [BR:
otw04090
]
Proteins
112232226
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_FAT4_N
Cadherin_2
TMEM132_C
EutN_CcmL
Motif
Other DBs
NCBI-GeneID:
112232226
NCBI-ProteinID:
XP_024254809
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All DBs
Position
LG12:complement(57465342..57477569)
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AA seq
768 aa
AA seq
DB search
MMRKSAWRQMTGPEMWMGLFALAVTLSLTMAEHVDQRPALQTSPVLHRHKREWLWNNLYV
EEERPTNKQYYIGKLKSTKSGDGTHYVIKGEGANTIFKVDEKGHIYVTERLDREEKSKYL
LSAKLFDTSNILVEKVEEFVILVTDINDNDPVFTKSFSASIKERSKSGTGGTKVIEVTAT
DADDPTTANGELAYTLLEGGDFFNIDNTTGIITTKYENLDRETQSSYVVVVQAQDLRGLK
QGGTATTSVTIAVSDINDNIATFTKRSYVFSVKEDMKRGQRIDTIVLEDRDEIQNKDPIV
TIEPPSDTFEMERSQNKDGNLMLKQGLDYETKSSYTFFVHVRENHLQSPVDNKDNPVIKA
QVTIQVLDVDEQPEFSESLYNFNVIEEIMVNNIGVVSARDPDKANKAIRYSIEDKDSPIG
INPITGQLFTVRKLDRELVANHMFQVKAKEEPNGLESFVNVNILVIDINDNKPELSIEEI
FVCENDMAGTVIGTISATDKDDHLPAFSFTLVKPNGNFSVVDNNDNTSNIVLKHGGFSLE
DSRDYVIEIGISDGGRPPMSSITTLPIKVCRCDNKRIHTQCKAAQLKMGVGVYTLIPILC
ILTILIIVILIAMRKRHQKDALVTLGKSEIHEQLVTYDEEGGGEMDTNGYDVSILTSARN
DGSMSMRQGPSLYAMVKKPPTACKGDMAVMIEVKKDEADHDRDGIPYDTLHIYGYEGPES
LAGSLSSLDSSSTGSSLDYDFLNDWGPRFKTLAELYGVDGSEGSDSLY
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atgatgagaaagtctgcatggaggcagatgactgggccagagatgtggatgggtctcttt
gccttggccgtgaccctcagtctaaccatggctgaacatgtggaccagaggccagcactc
caaaccagcccagttctccacaggcacaagcgagagtggttgtggaacaacctttacgta
gaggaggaaaggccaaccaacaaacaatactatatcggaaagttaaagtcaactaaatct
ggtgacgggacacactatgtcattaaaggagaaggtgccaacactatcttcaaagtggat
gaaaaaggacacatctatgtcactgaacgattggatcgagaggagaaaagcaaatacctt
ctaagtgccaagctgtttgatacgagcaacatattggtggagaaagtggaggagtttgtg
atcctggttactgacattaatgacaacgatccggtgtttaccaaatcgttcagcgcttct
atcaaagagagatccaaaagcggtacaggaggaactaaagtgatagaagtcactgccact
gatgcagatgatccaacgactgcaaatggagaacttgcttacacattattagagggggga
gatttcttcaatatagacaacacaacggggattatcaccaccaagtatgagaacctggac
cgtgagacccagagtagctatgtggttgtggttcaagcccaggatctgagaggacttaaa
caagggggcaccgccaccacctctgtcacaatcgcagtcagcgacatcaatgataacata
gccacatttaccaaacgttcctatgtatttagtgtgaaagaggacatgaagcggggacag
agaatagacaccatagtcctggaggacagagatgagatccagaataaagacccaatcgtc
accatagaacctccatctgacacatttgaaatggagcgcagtcagaacaaagacggcaac
ctcatgctgaaacagggactggattacgaaaccaagagcagctacacgttctttgtgcac
gtgagggagaaccacttgcagtcccctgtggataataaggacaatcccgtgatcaaggcc
caggtgaccatccaggtgctagacgttgatgagcagccagaattcagcgagagcctctac
aactttaatgtgatagaggaaattatggtcaataatattggagtcgtttcagccagagat
cctgataaagccaacaaggccataaggtattccatcgaggacaaggacagtcccattggt
atcaaccccataactggacaacttttcacagtgaggaagctggatcgggagcttgtagcg
aatcacatgttccaggttaaagctaaggaggaacccaatggactggaatcttttgtgaac
gtcaacatactggtcattgatatcaatgacaataaaccagagctgtccattgaagagata
ttcgtttgtgaaaatgatatggctggcacggtgattgggaccataagtgcgacagacaaa
gatgatcatttgcccgcattcagcttcacattggtgaagccgaacggcaacttttcggtc
gtcgataacaacgacaacacatctaacatagtcctgaaacatggaggcttcagcctggag
gactccagggattatgtaatagagattgggatcagcgatggaggcaggcctcccatgagc
agcatcaccactctgcctatcaaagtgtgcaggtgtgacaacaagaggattcacacccag
tgcaaagcagcccaactaaaaatgggtgtgggtgtctacaccctgattcctatactgtgc
atcctgactattctgatcatagtgatcctgatcgctatgagaaagcgtcaccaaaaggac
gccctggtcactctgggtaagagtgagatccacgagcagctagtgacgtacgacgaggag
ggcggtggggagatggacaccaacggctacgacgtgtccatcctgacctcagctcggaat
gacggcagcatgagcatgaggcagggccccagcctttacgccatggtgaagaaaccgcca
accgcgtgcaagggagacatggccgtgatgatcgaggtgaagaaagacgaagctgaccat
gacagggatgggatcccctacgataccctgcacatctacggctacgaggggccagagtcc
ctggctggtagcctcagttcgctggatagttcatccactggctctagccttgactatgac
ttcttaaatgactggggccctcgcttcaaaaccctggctgagctctacggggtagatggg
tctgagggaagtgactccctgtattga
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