Oncorhynchus tshawytscha (Chinook salmon): 112232254
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Entry
112232254 CDS
T05605
Name
(RefSeq) autophagy-related protein 13 isoform X1
KO
K08331
autophagy-related protein 13
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04136
Autophagy - other
otw04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
112232254
04136 Autophagy - other
112232254
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112232254
03029 Mitochondrial biogenesis [BR:
otw03029
]
112232254
Membrane trafficking [BR:
otw04131
]
Autophagy
Autophagosome formation proteins
ULK complex
112232254
Atg1 complex
112232254
Mitochondrial biogenesis [BR:
otw03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
112232254
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG13
Motif
Other DBs
NCBI-GeneID:
112232254
NCBI-ProteinID:
XP_024254856
LinkDB
All DBs
Position
LG12:56780976..56792292
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AA seq
512 aa
AA seq
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MMDSDLSPQDKKDLDKFIKFFALKTVQVIVQARLGEKVCTRSLSSPTGSDWFNLAIKDIP
EVTHESKKALAGQLPGIERSMCVEISLKTSEGDSMELETWCLEMNEKCDRDIKVSYTVYN
RMSLLLKSLLAITRVTPAYKLSRKQGHDYVILYRIYFGEVQLTGLGEGFQTVRVGVVGTP
IGTITLSCAYRTNLAFMSTRQFERTAPIMGIIIDHFVERPFGNVGHMHPCIYRAPGEDEG
AYNGVEDSQEVCTTSFSTSPPSQLYCSRLSYQSPVLDGAADFCHPSTLNAANPHQMGVPG
KEGGVPQQVPVQPCHGAQAEHRRVSSCPPADHVPATPSSSGEDAETSSRSVGVKSGSPCG
LLETTFTRKVGAFVNKPGTKVTTASLDLPFAAFAPRAYDLEENDPMVQPPESSATSSPLQ
GSLHSQGSGESGGPAQDDFVMVDFKPAFSKDDLLPMDLGTFYREFQNPPQLTSLTIDVSS
QSMAEDLDALPEKLAVYEKNIDEFDAFVDTLQ
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgatggacagtgatctaagtcctcaggataaaaaagacttggacaagttcataaagttt
ttcgctttgaagacagtacaggtgatagtccaagctcgacttggggaaaaagtatgcaca
cgctccttgtcttcacctactggctctgattggttcaacctggcaatcaaagatatccca
gaagttacacatgagtcaaagaaagctctggccgggcagcttcctggcatcgaacggtcc
atgtgtgttgagatctccctcaaaacctcagagggagactcgatggaattggagacatgg
tgtctcgaaatgaacgagaagtgtgacagagatattaaagtgtcctacactgtctataac
cgcatgtcattactgctcaagtcactactggctatcacaagggtaaccccagcctacaaa
ctttcacgaaagcaagggcacgactatgtcatactgtacaggatatattttggagaggtt
caacttacaggattgggagaagggttccagacagtgcgtgtaggagttgtgggaactcct
attggaaccatcaccttatcttgtgcttacaggacaaacctggccttcatgtccaccagg
cagtttgagaggacggctccgattatgggcataatcattgaccacttcgttgagcgcccc
tttggcaacgtgggacacatgcatccatgtatctacagagcacccggagaagatgaagga
gcatacaatggggtggaggattctcaggaagtgtgcaccacgtccttctccacttctcca
ccctcacaactctactgctctcgtctttcttatcagtctcctgtgcttgatggagctgct
gacttctgccacccctctaccttaaacgctgccaacccacaccagatgggagttccaggg
aaggagggcggcgtaccccagcaggtgcctgtgcagccttgtcatggagcccaggcagag
catcgacgagtgtcctcatgcccccctgctgatcatgttcccgccacgccctccagcagt
ggtgaggacgcagagacctcgtcgaggagcgttggggtgaagagtggctctccctgtggt
ttactggagaccaccttcaccaggaaagtgggtgcctttgtcaacaagccaggcacaaag
gtaaccacagcaagcctggacttaccatttgcagcgtttgctcccagagcctatgacctc
gaggaaaatgaccctatggttcagccaccggagtcctcagccacgtcctctcccctgcag
ggcagtttgcactcccaaggctctggtgagagtggaggcccggcacaggacgactttgtt
atggtggactttaagcctgcgttctccaaggatgacctccttcccatggaccttggcaca
ttctacagagagttccagaaccccccacagctcaccagcctcactattgatgtcagttct
cagtccatggcagaagacctggacgctcttcctgaaaaactggcagtatacgagaagaac
attgatgaatttgatgcatttgtggacacattgcagtag
DBGET
integrated database retrieval system
